FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.324e-42
Identity = 75/146 (51.37%), Postives = 99/146 (67.81%), Query Frame = 1
Query:  136 TKACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            T AC     AS+  AP     ++GLK TS    PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N++ PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK
Sbjct:   13 TAACAAPAQASM-VAP-----FVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKK 150          

HSP 2 Score: 39.2762 bits (90), Expect = 1.324e-42
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF++++P
Sbjct:  149 KKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.324e-42
Identity = 62/100 (62.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG +  CM+ W PI  KKFE LSYLP L+D  +AKE+DY+++  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK
Sbjct:   48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147          

HSP 2 Score: 41.2022 bits (95), Expect = 1.324e-42
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  146 KKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.325e-42
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  S A  P        S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+K W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK
Sbjct:   25 FTGLK--SNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKK 147          

HSP 2 Score: 35.4242 bits (80), Expect = 1.325e-42
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+ F+  +P
Sbjct:  146 KKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.325e-42
Identity = 73/141 (51.77%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            P  M++S  T     + + GLK T  A LPV      S  +VSNG + RCM+ W     KKFE LSYLP LS ++++K++DY+++  W+PCLEF +VG+V RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK
Sbjct:    3 PAVMASSATTV----APFQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKK 137          

HSP 2 Score: 39.6614 bits (91), Expect = 1.325e-42
Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V+K YP+AY+R + F+N +Q QC+SF+  +P
Sbjct:  135 VKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.249e-42
Identity = 72/140 (51.43%), Postives = 98/140 (70.00%), Query Frame = 1
Query:  160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            SA++ T+P   +    + GLK +S   +  K +   +S  VSNG +  CMK W P+  KKFE LSYLP L++  + KE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK
Sbjct:    8 SAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITS-IVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECK 146          

HSP 2 Score: 39.6614 bits (91), Expect = 2.249e-42
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  149 YPNAFIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.250e-42
Identity = 76/143 (53.15%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  160 SASIFTAPVAGSG-----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            +A++ TA  A        + GLK TS   +  K ++  +S   +NG +  CM+ W P N KKFE LSYLP+LS++S+ KEI+Y+L KGW+PCLEF EVG  +V+REN++ PGYYDGRYWTMWKLPMFGC D+SQ+  E+ ECK
Sbjct:    7 NAAVVTASTAAQANMVAPFSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECK 147          

HSP 2 Score: 39.2762 bits (90), Expect = 2.250e-42
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            + AYP+A++R + F+N++Q QC+SF+  KP
Sbjct:  147 KNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.930e-42
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  136 TKACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            T AC     AS+  AP     ++GLK  S A    + ++   S   SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N++ PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK
Sbjct:   13 TAACVAPAQASM-VAP-----FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKK 150          

HSP 2 Score: 40.4318 bits (93), Expect = 2.930e-42
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+++KP
Sbjct:  149 KKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.976e-42
Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 1
Query:  160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            SA++ T+P   +    + GLK  S A  PV         ++ SNG +  CMK W P+  KKFE LSYLP L++  + KE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK
Sbjct:    8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECK 146          

HSP 2 Score: 39.6614 bits (91), Expect = 4.976e-42
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  149 YPNAFIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.976e-42
Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LS + +  EI+Y+LK GW+PCLEF+ E G+V+RE++  PGYYDGRYWTMWKLPMFGC D++Q+  E+QE KK
Sbjct:   26 FTGLKSNASFPVSRKTNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKK 149          

HSP 2 Score: 40.4318 bits (93), Expect = 4.976e-42
Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.484e-42
Identity = 73/146 (50.00%), Postives = 98/146 (67.12%), Query Frame = 1
Query:  136 TKACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            T AC     AS+  AP     ++GLK  S +  PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N++ PGYYDGRYWTMWKLPMFGC  ++Q++ E  ECKK
Sbjct:   13 TAACAAPAQASM-VAP-----FVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKK 150          

HSP 2 Score: 40.4318 bits (93), Expect = 6.484e-42
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP A+IR + F+N +Q QC+SF+++KP
Sbjct:  149 KKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS1_FRIAG1.324e-4251.37Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS1A_ARATH1.324e-4262.00Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_HELAN1.325e-4256.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_WHEAT1.325e-4251.77Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_BRANA2.249e-4251.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SILPR2.250e-4253.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FRIAG2.930e-4249.66Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_BRANA4.976e-4251.06Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS_STELP4.976e-4254.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FRIAG6.484e-4250.00Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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