FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.324e-42 Identity = 75/146 (51.37%), Postives = 99/146 (67.81%), Query Frame = 1 Query: 136 TKACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 T AC AS+ AP ++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYWTMWKLPMFGC D++Q++ E ECKK Sbjct: 13 TAACAAPAQASM-VAP-----FVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKK 150 HSP 2 Score: 39.2762 bits (90), Expect = 1.324e-42 Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF++++P Sbjct: 149 KKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 1.324e-42 Identity = 62/100 (62.00%), Postives = 80/100 (80.00%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + CM+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK Sbjct: 48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147 HSP 2 Score: 41.2022 bits (95), Expect = 1.324e-42 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 146 KKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.325e-42 Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S A P S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+K W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK Sbjct: 25 FTGLK--SNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKK 147 HSP 2 Score: 35.4242 bits (80), Expect = 1.325e-42 Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+ F+ +P Sbjct: 146 KKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 1.325e-42 Identity = 73/141 (51.77%), Postives = 99/141 (70.21%), Query Frame = 1 Query: 148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 P M++S T + + GLK T A LPV S +VSNG + RCM+ W KKFE LSYLP LS ++++K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKK 137 HSP 2 Score: 39.6614 bits (91), Expect = 1.325e-42 Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V+K YP+AY+R + F+N +Q QC+SF+ +P Sbjct: 135 VKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 2.249e-42 Identity = 72/140 (51.43%), Postives = 98/140 (70.00%), Query Frame = 1 Query: 160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 SA++ T+P + + GLK +S + K + +S VSNG + CMK W P+ KKFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK Sbjct: 8 SAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITS-IVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECK 146 HSP 2 Score: 39.6614 bits (91), Expect = 2.249e-42 Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3 Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653 YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 149 YPNAFIRIIGFDNNRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.250e-42 Identity = 76/143 (53.15%), Postives = 101/143 (70.63%), Query Frame = 1 Query: 160 SASIFTAPVAGSG-----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 +A++ TA A + GLK TS + K ++ +S +NG + CM+ W P N KKFE LSYLP+LS++S+ KEI+Y+L KGW+PCLEF EVG +V+REN++ PGYYDGRYWTMWKLPMFGC D+SQ+ E+ ECK Sbjct: 7 NAAVVTASTAAQANMVAPFSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECK 147 HSP 2 Score: 39.2762 bits (90), Expect = 2.250e-42 Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 + AYP+A++R + F+N++Q QC+SF+ KP Sbjct: 147 KNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.930e-42 Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 1 Query: 136 TKACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 T AC AS+ AP ++GLK S A + ++ S SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYWTMWKLPMFGC D++Q++ E ECKK Sbjct: 13 TAACVAPAQASM-VAP-----FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKK 150 HSP 2 Score: 40.4318 bits (93), Expect = 2.930e-42 Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+++KP Sbjct: 149 KKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 4.976e-42 Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 1 Query: 160 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 SA++ T+P + + GLK S A PV ++ SNG + CMK W P+ KKFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECK 146 HSP 2 Score: 39.6614 bits (91), Expect = 4.976e-42 Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3 Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653 YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 149 YPNAFIRIIGFDNNRQVQCISFIAYKP 175
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 4.976e-42 Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LS + + EI+Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D++Q+ E+QE KK Sbjct: 26 FTGLKSNASFPVSRKTNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKK 149 HSP 2 Score: 40.4318 bits (93), Expect = 4.976e-42 Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 6.484e-42 Identity = 73/146 (50.00%), Postives = 98/146 (67.12%), Query Frame = 1 Query: 136 TKACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 T AC AS+ AP ++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYWTMWKLPMFGC ++Q++ E ECKK Sbjct: 13 TAACAAPAQASM-VAP-----FVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKK 150 HSP 2 Score: 40.4318 bits (93), Expect = 6.484e-42 Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+++KP Sbjct: 149 KKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |