FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.021e-41
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYWTMWKLPMFGC D++Q+L E+QE KK
Sbjct:   50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKK 149          

HSP 2 Score: 42.3578 bits (98), Expect = 7.021e-41
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.153e-41
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG K  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK
Sbjct:   50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148          

HSP 2 Score: 38.891 bits (89), Expect = 9.153e-41
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.192e-40
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  205 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            GLK  S A  PV       +   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L KGWIPC+EF+ E  +V+REN R PGY DGRYWTMWKLPM+GC D +Q+LNE++E KK
Sbjct:   32 GLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 152          

HSP 2 Score: 41.5874 bits (96), Expect = 1.192e-40
Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N++Q QC+SF+  KP
Sbjct:  151 KKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.192e-40
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK
Sbjct:   25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 147          

HSP 2 Score: 38.5058 bits (88), Expect = 1.192e-40
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+ R + F+N +Q QC+SF+  KP
Sbjct:  146 KKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.553e-40
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  262 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK
Sbjct:   47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 150          

HSP 2 Score: 40.4318 bits (93), Expect = 1.553e-40
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  149 KKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.023e-40
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK T+ A    + S    +   SNG + +CMK W P+  +KFE LSYLP LS +S+AK+I+Y++ KGWIPCLEF+ E  +V+REN+R PGYYDGRYW MWKLPMFGC D++Q+L E+QE  K
Sbjct:   28 FTGLKSTA-AFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASK 151          

HSP 2 Score: 38.1206 bits (87), Expect = 2.023e-40
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            K YP ++IR + F+N++Q QC+SF+  KP
Sbjct:  151 KTYPTSHIRIIGFDNKRQVQCISFIAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.024e-40
Identity = 71/147 (48.30%), Postives = 93/147 (63.27%), Query Frame = 1
Query:  157 MSASIFTAPVAGSG--------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + ++  TA V  SG        + GLK  S A  PV       +   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L  GWIPC+EF+ E  +V+REN R PGY DGRYWTMWKLPM+GC D +Q+LNE++E KK
Sbjct:    5 LMSNAITAVVGASGAQANMVAPFNGLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 149          

HSP 2 Score: 41.2022 bits (95), Expect = 2.024e-40
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A+IR + F+N++Q QC+SF+  KP
Sbjct:  148 KKAYPSAFIRIIGFDNKRQVQCVSFIAFKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.025e-40
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148          

HSP 2 Score: 38.891 bits (89), Expect = 2.025e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.025e-40
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148          

HSP 2 Score: 38.891 bits (89), Expect = 2.025e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.025e-40
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148          

HSP 2 Score: 38.891 bits (89), Expect = 2.025e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS1_PETHY7.021e-4161.00Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS2_LEMGI9.153e-4161.62Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS2_AMAHP1.192e-4054.47Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_MESCR1.192e-4052.80Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS4_MESCR1.553e-4057.69Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_FAGCR2.023e-4055.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP2.024e-4048.30Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS6_LEMGI2.025e-4060.61Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI2.025e-4060.61Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI2.025e-4060.61Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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