FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 3.436e-40 Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 199 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 + GLK S A PV K + + SNG + CM+ W P+ KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN R PGYYDGRYWTMW+LP+FG DSSQ+L E+ +CK Sbjct: 26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCK 148 HSP 2 Score: 33.8834 bits (76), Expect = 3.436e-40 Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3 Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653 YP+++IR + F+N +Q QC+SF+ P Sbjct: 151 YPDSFIRIIGFDNVRQVQCISFIAHTP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 3.436e-40 Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 160 SASIFT--APVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SA+ FT +P S + GLK S + K + A S SNG + +CMK W KKFE LSYLP++ D+++ K+I+Y+L+ WIPCLEF G+V REN R PGYYDGRYWTMWKLPMFGC D+ Q+ E++ECKK Sbjct: 9 SAATFTRASPAQSSMVAPFTGLKSASAFPVTRKPN-ADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKK 149 HSP 2 Score: 39.6614 bits (91), Expect = 3.436e-40 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP+A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKEYPHAFIRIIGFDNNRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 3.439e-40 Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1 Query: 148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 P M++S T + + GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN R PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKK 138 HSP 2 Score: 36.5798 bits (83), Expect = 3.439e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A++R + F+N +Q Q +SF+ KP Sbjct: 137 KKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 3.439e-40 Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1 Query: 148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 P M++S T + + GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN R PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKK 138 HSP 2 Score: 36.5798 bits (83), Expect = 3.439e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A++R + F+N +Q Q +SF+ KP Sbjct: 137 KKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 4.477e-40 Identity = 71/135 (52.59%), Postives = 96/135 (71.11%), Query Frame = 1 Query: 160 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561 ++++ +A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYWTMWKLPMFG D+SQ+L E+ E Sbjct: 16 ASTVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDE 146 HSP 2 Score: 36.1946 bits (82), Expect = 4.477e-40 Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V AYP A++R + F+N +Q QC+SF+ P Sbjct: 147 VVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 4.481e-40 Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 S+G + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK Sbjct: 46 SSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 144 HSP 2 Score: 38.891 bits (89), Expect = 4.481e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++R + F+N++Q QC+SF+ KP Sbjct: 143 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.833e-40 Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 SNG + +CMK W N K++E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+RE+ PGYYDGRYWTMWKLPMFGC D +Q+LNE++ECKK Sbjct: 50 SNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKK 149 HSP 2 Score: 39.6614 bits (91), Expect = 5.833e-40 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YPNA+IR + F++ +Q QC+SF+ KP Sbjct: 148 KKEYPNAFIRIIGFDSNRQVQCVSFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 5.835e-40 Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 1 Query: 277 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 NG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK Sbjct: 51 NGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148 HSP 2 Score: 38.891 bits (89), Expect = 5.835e-40 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP ++R + F+N++Q QC+SF+ KP Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 9.902e-40 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 1 Query: 175 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561 +A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYWTMWKLPMFG D+SQ+L E+ E Sbjct: 21 SAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDE 146 HSP 2 Score: 36.1946 bits (82), Expect = 9.902e-40 Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V AYP A++R + F+N +Q QC+SF+ P Sbjct: 147 VVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.906e-40 Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 + GLK S A PV + SNGS+ CM+ W P+ KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ + PGYYDGRYWTMW+LP+FG D++Q+L E+ ECK Sbjct: 25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECK 146 HSP 2 Score: 34.6538 bits (78), Expect = 9.906e-40 Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3 Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653 YP A+IR + F+N +Q QC+SF+ P Sbjct: 149 YPEAFIRIIGFDNVRQVQCISFIASTP 175 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |