FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.436e-40
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  199 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            + GLK  S A  PV K +    +   SNG +  CM+ W P+  KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN R PGYYDGRYWTMW+LP+FG  DSSQ+L E+ +CK
Sbjct:   26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCK 148          

HSP 2 Score: 33.8834 bits (76), Expect = 3.436e-40
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            YP+++IR + F+N +Q QC+SF+   P
Sbjct:  151 YPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.436e-40
Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = 1
Query:  160 SASIFT--APVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SA+ FT  +P   S    + GLK  S   +  K + A  S   SNG + +CMK W     KKFE LSYLP++ D+++ K+I+Y+L+  WIPCLEF   G+V REN R PGYYDGRYWTMWKLPMFGC D+ Q+  E++ECKK
Sbjct:    9 SAATFTRASPAQSSMVAPFTGLKSASAFPVTRKPN-ADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 3.436e-40
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YP+A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKEYPHAFIRIIGFDNNRQVQCISFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.439e-40
Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1
Query:  148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            P  M++S  T     + + GLK T  A +PV      SS   VSNG + RCM+ W     KKFE LSYLP L+ + + K+I+Y+L+  W+PCLEF +VG+V+REN R PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:    3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKK 138          

HSP 2 Score: 36.5798 bits (83), Expect = 3.439e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:  137 KKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.439e-40
Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1
Query:  148 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            P  M++S  T     + + GLK T  A +PV      SS   VSNG + RCM+ W     KKFE LSYLP L+ + + K+I+Y+L+  W+PCLEF +VG+V+REN R PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:    3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKK 138          

HSP 2 Score: 36.5798 bits (83), Expect = 3.439e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:  137 KKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.477e-40
Identity = 71/135 (52.59%), Postives = 96/135 (71.11%), Query Frame = 1
Query:  160 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561
            ++++ +A VA  G  GLK  S    PVK      +   SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E
Sbjct:   16 ASTVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDE 146          

HSP 2 Score: 36.1946 bits (82), Expect = 4.477e-40
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V  AYP A++R + F+N +Q QC+SF+   P
Sbjct:  147 VVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 4.481e-40
Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            S+G +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN+  PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK
Sbjct:   46 SSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 144          

HSP 2 Score: 38.891 bits (89), Expect = 4.481e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  143 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.833e-40
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            SNG + +CMK W   N K++E LSYLP L+ D +A+++DY+L   W+PCLEF+ + G+V+RE+   PGYYDGRYWTMWKLPMFGC D +Q+LNE++ECKK
Sbjct:   50 SNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 5.833e-40
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +K YPNA+IR + F++ +Q QC+SF+  KP
Sbjct:  148 KKEYPNAFIRIIGFDSNRQVQCVSFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.835e-40
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  277 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            NG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK
Sbjct:   51 NGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKK 148          

HSP 2 Score: 38.891 bits (89), Expect = 5.835e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.902e-40
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  175 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561
            +A VA  G  GLK  S    PVK      +   SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E
Sbjct:   21 SAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDE 146          

HSP 2 Score: 36.1946 bits (82), Expect = 9.902e-40
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V  AYP A++R + F+N +Q QC+SF+   P
Sbjct:  147 VVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.906e-40
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            + GLK  S A  PV       +   SNGS+  CM+ W P+  KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ +  PGYYDGRYWTMW+LP+FG  D++Q+L E+ ECK
Sbjct:   25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECK 146          

HSP 2 Score: 34.6538 bits (78), Expect = 9.906e-40
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            YP A+IR + F+N +Q QC+SF+   P
Sbjct:  149 YPEAFIRIIGFDNVRQVQCISFIASTP 175          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_MEDSA3.436e-4055.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC3.436e-4051.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSJ3.439e-4052.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI3.439e-4052.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_PEA4.477e-4052.59Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS1_LEMGI4.481e-4059.60Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS2_SPIOL5.833e-4059.00Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_LEMGI5.835e-4060.20Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS2_PEA9.902e-4054.62Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS_TRIRP9.906e-4052.42Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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