FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.291e-39
Identity = 69/125 (55.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  199 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK T  A LPV + S       VSNG + +CM+ W     KKFE LSYLP L+ + + K+I+Y+L+  W+PCLEF +VG+V+REN R PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK
Sbjct:   16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKK 138          

HSP 2 Score: 36.5798 bits (83), Expect = 1.291e-39
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:  137 KKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.842e-39
Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKH 573
            + GLK T       K +   +S T SNG K +CMK W  +  KKFE LSYLP L+ + +A E++Y+L+ GWIPCLEF+ E G V+RE++R+PGYYDGRYWTMWKLPMFGC D++Q+L E+ E  KH
Sbjct:   28 FTGLKSTPVFPTTRKTNSDITSIT-SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKH 152          

HSP 2 Score: 35.039 bits (79), Expect = 4.842e-39
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            K +P+ Y R + F+N +Q QC+SFL  KP
Sbjct:  151 KHHPDGYARIIGFDNVRQVQCISFLAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.842e-39
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  262 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            +   SNG + +CM  W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK
Sbjct:   47 TSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 149          

HSP 2 Score: 40.4318 bits (93), Expect = 4.842e-39
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            +KAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  148 KKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.020e-38
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK TS A    + +    +   SNG + +CM+ W P   K +E LSYLP L+ + +AKE++Y+L+KGW+PCLEF+ E G V+RE  R PGYYDGRYWTMWKLPMFGC D+ Q+L E+ E  K
Sbjct:   28 FTGLKSTS-AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIK 151          

HSP 2 Score: 38.1206 bits (87), Expect = 4.020e-38
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            KAYP+ Y R + F+N +Q QC+SFL  KP
Sbjct:  151 KAYPDCYGRIIGFDNVRQVQCISFLAYKP 179          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1
Query:  175 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561
            ++  A + + GLK T  A LPV      S   VSNG + RCM+ W    NKKFE LSYLP L+ + + K++DY+L+  W+PCLEF + G+V+RENS  P YYDGRYWTMWKLPMFGC D+SQ+  E+QE
Sbjct:    8 SSATAAAPFQGLKST--ASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQE 134          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.620e-37
Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  199 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            + GLK T  A LPV + S   S  +VSNG + RCM+ W     KKFE LSYLP LS + + K++DY+++  W+PCLEF +VG++ RE++  PGYYDGRYWTMWKLPMFGC   +Q++ E++E +K
Sbjct:   16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFRKVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRK 138          

HSP 2 Score: 35.4242 bits (80), Expect = 9.620e-37
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V+K YP+ Y R + F+N +Q Q +SF+  KP
Sbjct:  136 VRKEYPDPYCRIIGFDNMRQVQSVSFIASKP 166          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.649e-36
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561
            SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+ E+++ P YYDGRYWTMWKLPMFG  D +Q++ E+ E
Sbjct:    6 SNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDE 102          

HSP 2 Score: 38.1206 bits (87), Expect = 1.649e-36
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V  AYP A++R + FNN +Q QC+SF+   P
Sbjct:  103 VVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.050e-33
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  157 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            ++ S  +A VA      ++P + AL P     A  +  V+  ++   M  W P+NNK FE  SYLP LSD+ IA ++DY++  GWIPCLEF E    YV  E++   G     YYD RYWTMWKLPMFGC D  Q+L EI  C K
Sbjct:    5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTK 143          

HSP 2 Score: 44.669 bits (104), Expect = 2.050e-33
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            KA+P+AY+R +AF+NQKQ Q M FL+Q+P
Sbjct:  143 KAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.670e-33
Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  157 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            ++ S  +A VA      ++P + AL P     A  +  V+  ++   M  W P+NNK FE  SYLP L+D+ IA ++DY++  GWIPCLEF E    YV  E++   G     YYD RYWTMWKLPMFGC D  Q+L EI  C K
Sbjct:    5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTK 143          

HSP 2 Score: 44.669 bits (104), Expect = 2.670e-33
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            KA+P+AY+R +AF+NQKQ Q M FL+Q+P
Sbjct:  143 KAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.027e-33
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  298 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            M+ W P+  KKFE LSYLP L+ + +  E++Y+L KGWIP LEF+ + G+V+RE+ + PGYYDGRYWTMWKLPMFG  D +Q++NE++E KK
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKK 92          

HSP 2 Score: 37.7354 bits (86), Expect = 6.027e-33
Identity = 14/31 (45.16%), Postives = 25/31 (80.65%), Query Frame = 3
Query:  561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            V+KA P+A++R + FN++++ QC+SF+  KP
Sbjct:   90 VKKAPPDAFVRFIGFNDKREVQCISFIAYKP 120          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS2_ORYSJ1.291e-3955.20Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS_MANES4.842e-3954.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_MESCR4.842e-3957.69Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_HEVBR4.020e-3852.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY9.222e-3753.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA9.620e-3752.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA1.649e-3656.70Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE2.050e-3344.83Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE2.670e-3344.14Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SPIOL6.027e-3357.61Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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