FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 1.291e-39 Identity = 69/125 (55.20%), Postives = 90/125 (72.00%), Query Frame = 1 Query: 199 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN R PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKK 138 HSP 2 Score: 36.5798 bits (83), Expect = 1.291e-39 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP+A++R + F+N +Q Q +SF+ KP Sbjct: 137 KKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.842e-39 Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKH 573 + GLK T K + +S T SNG K +CMK W + KKFE LSYLP L+ + +A E++Y+L+ GWIPCLEF+ E G V+RE++R+PGYYDGRYWTMWKLPMFGC D++Q+L E+ E KH Sbjct: 28 FTGLKSTPVFPTTRKTNSDITSIT-SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKH 152 HSP 2 Score: 35.039 bits (79), Expect = 4.842e-39 Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 K +P+ Y R + F+N +Q QC+SFL KP Sbjct: 151 KHHPDGYARIIGFDNVRQVQCISFLAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 4.842e-39 Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1 Query: 262 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + SNG + +CM W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KK Sbjct: 47 TSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 149 HSP 2 Score: 40.4318 bits (93), Expect = 4.842e-39 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.020e-38 Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK TS A + + + SNG + +CM+ W P K +E LSYLP L+ + +AKE++Y+L+KGW+PCLEF+ E G V+RE R PGYYDGRYWTMWKLPMFGC D+ Q+L E+ E K Sbjct: 28 FTGLKSTS-AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIK 151 HSP 2 Score: 38.1206 bits (87), Expect = 4.020e-38 Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KAYP+ Y R + F+N +Q QC+SFL KP Sbjct: 151 KAYPDCYGRIIGFDNVRQVQCISFLAYKP 179
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37 Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1 Query: 175 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561 ++ A + + GLK T A LPV S VSNG + RCM+ W NKKFE LSYLP L+ + + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+SQ+ E+QE Sbjct: 8 SSATAAAPFQGLKST--ASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQE 134
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 9.620e-37 Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 199 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS + + K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC +Q++ E++E +K Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFRKVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRK 138 HSP 2 Score: 35.4242 bits (80), Expect = 9.620e-37 Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V+K YP+ Y R + F+N +Q Q +SF+ KP Sbjct: 136 VRKEYPDPYCRIIGFDNMRQVQSVSFIASKP 166
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.649e-36 Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = 1 Query: 274 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 561 SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+ E+++ P YYDGRYWTMWKLPMFG D +Q++ E+ E Sbjct: 6 SNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDE 102 HSP 2 Score: 38.1206 bits (87), Expect = 1.649e-36 Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V AYP A++R + FNN +Q QC+SF+ P Sbjct: 103 VVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.050e-33 Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 1 Query: 157 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYWTMWKLPMFGC D Q+L EI C K Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTK 143 HSP 2 Score: 44.669 bits (104), Expect = 2.050e-33 Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KA+P+AY+R +AF+NQKQ Q M FL+Q+P Sbjct: 143 KAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.670e-33 Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = 1 Query: 157 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYWTMWKLPMFGC D Q+L EI C K Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTK 143 HSP 2 Score: 44.669 bits (104), Expect = 2.670e-33 Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KA+P+AY+R +AF+NQKQ Q M FL+Q+P Sbjct: 143 KAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.027e-33 Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 298 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 M+ W P+ KKFE LSYLP L+ + + E++Y+L KGWIP LEF+ + G+V+RE+ + PGYYDGRYWTMWKLPMFG D +Q++NE++E KK Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKK 92 HSP 2 Score: 37.7354 bits (86), Expect = 6.027e-33 Identity = 14/31 (45.16%), Postives = 25/31 (80.65%), Query Frame = 3 Query: 561 VQKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 V+KA P+A++R + FN++++ QC+SF+ KP Sbjct: 90 VKKAPPDAFVRFIGFNDKREVQCISFIAYKP 120 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |