FC930857

Overview
NameFC930857
Unique NameFC930857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930857_ssr140 microsatellite FC930857_ssr140:140..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12851 contig Ccv1_Contig12851:696..1425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930857 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 53/168 (31.55%), Postives = 92/168 (54.76%), Query Frame = 2
Query:  215 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 718
            +RL GR+  VH+ +GGGK AD+ LWR + +S GV+  +T  W+                L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +Y KY+ +V
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKV 190          
BLAST of FC930857 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  233 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 718
            E+ VH+ +  G  AD+ +W+N++    +LG  T +W             V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D +
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLI 163          
BLAST of FC930857 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  242 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 718
            VH+ LG G  AD+ LWRN+  +  +L  +T  W             V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN    +  +I   R+  + L V   LW +S VG+  N LTL YI  +L  + P++YEKY+D +
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHI 171          
BLAST of FC930857 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 54/165 (32.73%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  230 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 718
            R + ++  LGGG+ AD+  W+NKK S  +LG  T IW             +C  L++ + +  +WS   +S  I   PP I ++ I E     L + + + I + +    +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ +
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLY----DISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          
BLAST of FC930857 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  242 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVGSF 727
            V ++LG G  AD+ LW++K  S   L  AT  W             +C  L++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V   T+PV+Y ++++ + SF
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHLL----MLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSF 162          
BLAST of FC930857 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 35/148 (23.65%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  275 DVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 718
            D++LWR KK++   L  +T+ W+            V    I  ++++FLW +    ++K  P +  + + EE V++   + R  +      +  + +  +   F   + G W++S +G+  +F T  +I  V+  TVP ++E+Y D++
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQI 165          
The following BLAST results are available for this feature:
BLAST of FC930857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLP_ARATH8.424e-2531.55Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH4.181e-2433.33Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH2.996e-2234.59Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH3.913e-2232.73Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH2.902e-1731.29Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH1.068e-1123.65Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34109G08EF PostHarvP1 Citrus clementina cDNA clone C34109G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930857 ID=FC930857; Name=FC930857; organism=Citrus clementina; type=EST; length=730bp
GATTTCTCAAGTTAAAAGGTTTGAAAACACCGACTGAGGGATTTGTACAG
AGAGCGAGATGGCTGACGAGCATAAACACGAGGAACCAGCCGGTGAATCG
GTGAAGGAGAAGATAACGGAGAAGATCCACGGCCACGATTCGTCGTCGTC
GTCATCGTCATCTGACTCCGATGATGATAAGAAGTCATCTGCATCCTCCC
TCAAGACCAAAGTATTTCGTCTCTTCGGAAGAGAAAAGCCTGTTCACAAG
GTTCTTGGTGGCGGAAAACCTGCGGATGTTTTCTTATGGAGGAACAAGAA
GATTTCAGCAGGAGTACTTGGTGGGGCTACTGCAATATGGGTTCTTTTTG
AATTGCTTGAGTACCACCTTCTAACTCTTGTCTGTCACTGCCTGATTGTT
GCACTTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCACCTTCATTAACAA
GTCTCCACCACGCATTCCAGAAGTATATATCCCTGAGGAACCAGTTTTAC
AGTTGGCCTCTGCACTTAGGTTTGAGATCAATAGGGCCTTCCCTCTTCTG
AGGGAAATAGCATCTGGAAGAGATCTGAAGAAGTTTCTCTCGGTGATTGC
TGGCTTGTGGGTTGTGTCGATTGTGGGGAGCTGGTGCAATTTCTTGACCT
TGTTCTACATAGTTTTTGTACTGCTTCACACTGTGCCTGTGATATATGAG
AAGTATGAGGATCGGGTGGGATCATTTTCT
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