FC930859

Overview
NameFC930859
Unique NameFC930859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 53/216 (24.54%), Postives = 107/216 (49.54%), Query Frame = 3 
Query:   78 NQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAI-NDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVT-GNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVI-----ETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDV 701
            N+         + +F    L+  K P   +V+    N DN  + +  + M++L    G T+L+KGKK+++ + IA  D + ++  + ++  ++ NLR+   D++ +H   + K  + V + P  DTI  ++   L  A + PY   +Y+P+R      +      +EFKV+     E++  E+  +   +++    E ++RED E   D++ Y+D+
Sbjct:  314 NEKTQKGVNDKETNFLLKALDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLDRSLKKHYVVISFAMKKNLRLMHNDIIKIHPFMNAKRIRNVVLSPFSDTIPNLSREELEKAVIHPYLKNSYKPLRVNSNIYIYYKNNKIEFKVLKIISEESENEEFGCIGEHSQLTLAEEYLKREDYEENNDDITYEDL 529
The following BLAST results are available for this feature:
BLAST of FC930859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CDAT_PLAF74.328e-1524.54Putative cell division cycle ATPase OS=Plasmodium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109G10EF PostHarvP1 Citrus clementina cDNA clone C34109G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930859 ID=FC930859; Name=FC930859; organism=Citrus clementina; type=EST; length=701bp
GATCCACAAAATTCTGTTTTCTCAATTCCTCTAATCACTTTCGTTATCTC
ATTCTCTTCAATCAACTAATTATGTCTAATCAAGCTGAATCCTCTGATGC
TAAGGGGACGAAGAGGGACTTTAGTACGGCCATTTTGGAGCGAAAGAAGG
CACCGAATCGTCTCGTTGTTGATGAAGCTATTAACGATGATAACTCTGTC
GTTGTTCTTCATCCCGATACCATGGAGAAGCTCCAATTCTTCCGCGGTGA
CACGATCCTCATCAAGGGAAAGAAAAGGAAAGATACCGTTTGTATTGCCC
TTGCCGACGATACATGTGAGGAACCGAAGATAAGAATGAATAAGGTCGTG
AGGTCGAACTTGAGGGTTAGACTCGGAGATGTTGTTTCTGTGCACCAGTG
CGCTGATGTCAAATACGGAAAGCGTGTGCACATATTACCTGTGGATGACA
CAATTGAAGGGGTTACTGGAAATCTCTTTGATGCATACTTGAAACCTTAT
TTCACGGAAGCTTATCGACCAGTGAGGAAGGGTGATCTATTCCTTGTTAG
AGGTGGAATGAGAAGTGTAGAGTTCAAGGTTATTGAGACTGACCCTCCTG
AATACTGTGTGGTTGCCCCTGATACTGAGATCTTCTGTGAGGGAGAGCCA
GTGAGAAGGGAAGATGAGAATCGATTAGATGAGGTTGGCTATGATGATGT
T
back to top