FC930860

Overview
NameFC930860
Unique NameFC930860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930860_ssr457 microsatellite FC930860_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.242e-62
Identity = 120/193 (62.18%), Postives = 149/193 (77.20%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            ++A G+ G++    ++KA +AEF + L+FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L  + YW+AQLLG+ VACLLL F T G      A+ +G+S    VVFE+V+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    3 KLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTHAV-AGISELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 194          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.118e-62
Identity = 120/193 (62.18%), Postives = 147/193 (76.17%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            RIA G+ G++    +LKA +AEF + L+FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L    YWIAQLLGS VACLLLK+ T GL      +++G++    VV EI++TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    3 RIAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.766e-62
Identity = 112/195 (57.44%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  114 PIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            P  R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  KL     STP GL++ SLAHA AL VAV+V  NISGGHVNPA+TFGA +GG ++L+R++ YW+AQLLG+VVA LLL+ +TGG+    FAL+SGV  W+AV+ E  MTFGL+Y  YAT +DPK+G++GTIAP+A+GF++GAN+LAGG FDGA
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGA 201          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.766e-62
Identity = 119/193 (61.66%), Postives = 146/193 (75.65%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            +I +G+ G++    +LKA L+EF + L+FVFAG GS +AF+KLT  GA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  +GG+ITL+    YWIAQ LGS+VACLLL F T G       +S+G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    3 KIEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.613e-62
Identity = 112/195 (57.44%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  114 PIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            P  R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  K+     ST  GL++ +LAHA AL VAV+V  NISGGHVNPAVTFGA VGG ++L+R++LYW+AQLLG+V A LLL+ +TGG+    FAL+SGV  W+AV+ E VMTFGL+Y  YAT +DPK+G++GTIAP+A+GF++GAN+LAGG FDGA
Sbjct:    7 PGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGA 200          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.613e-62
Identity = 119/192 (61.98%), Postives = 147/192 (76.56%), Query Frame = 3
Query:  126 IAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            IA G+ G++    +LKA +AEF + L+FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L    YWIAQLLGS VACLLLK+ T GL      +++G++ +  VV EI++TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.049e-62
Identity = 115/194 (59.28%), Postives = 145/194 (74.74%), Query Frame = 3
Query:  135 GTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            G   EA+HPD+++A LAEF S  +FVFA +GS ++  KL        G +TP GLI  +LAHAFALF AVS   N+SGGHVNPAVTFGA VGG +T +R+I YWIAQLLG+++ACLLL+ +T G+    F L+SGV + N +V EI++TFGLVY VY+T +DPK+G+LG IAP+AIG IVGANIL GG F GAS
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGAS 205          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.049e-62
Identity = 120/193 (62.18%), Postives = 148/193 (76.68%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            ++A G+ G++    ++KA +AEF + L+FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L  + YWIAQLLG+ +ACLLLKF T G       + +G+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    3 KLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGV-AGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 194          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.217e-61
Identity = 116/193 (60.10%), Postives = 146/193 (75.65%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            +IA G+ G++    ++KA +AEF + L+FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT+L  + YWIAQ LGS VACLLLKF T GL      +++G+ +   VV EI++TF LVYTVYATA DPKKG+LG IAPIAIGFIVGANILA G F G S
Sbjct:    3 KIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.814e-61
Identity = 120/193 (62.18%), Postives = 148/193 (76.68%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            ++A G+  ++    +LKA +AEF + L+FVFAG GS +A+S+LT GGA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVTFG  VGGHIT+L  ILYW+AQLLG+ VAC LL++ T G       + SG+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAP+AIGFIVGANILA G F G S
Sbjct:    3 KLAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHGV-SGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGS 194          
The following BLAST results are available for this feature:
BLAST of FC930860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TIP21_MAIZE1.242e-6262.18Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP1_TOBAC2.118e-6262.18Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP31_ORYSJ2.766e-6257.44Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP23_ARATH2.766e-6261.66Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP31_MAIZE3.613e-6257.44Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP2_TOBAC3.613e-6261.98Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP31_ARATH8.049e-6259.28Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP21_ORYSJ8.049e-6262.18Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA5.217e-6160.10Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP23_MAIZE6.814e-6162.18Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34109G11EF PostHarvP1 Citrus clementina cDNA clone C34109G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930860 ID=FC930860; Name=FC930860; organism=Citrus clementina; type=EST; length=703bp
GACAAACCGCTACGCAATATAAAACGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATT
TTCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGG
CAAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATG
CTTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCT
AACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGG
CTCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCT
GGGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCA
CATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGAT
CAGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACA
TCGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTT
TGAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAG
TGGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGT
TTCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATC
AAT
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