FC930860

Overview
NameFC930860
Unique NameFC930860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930860_ssr457 microsatellite FC930860_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.814e-61
Identity = 118/193 (61.14%), Postives = 145/193 (75.13%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            +I IG+ G++    +LKA L+EF + L+FVFAG GS +AF+KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT++    YWIAQ LGS+VACLLL F T G       +++G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    3 KIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.382e-60
Identity = 110/194 (56.70%), Postives = 146/194 (75.26%), Query Frame = 3
Query:  135 GTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            G   EA+HPD+++A LAEF S  +FVFAG+GS +A  KL        G +TP GL+  +LAHA ALF AVS   N+SGGHVNPAVTF A +GG I+++R+I YW+AQL+G+++ACLLL+ +T GL    F ++SGVS  + ++ EI++TF LVY VY+TA+DPK+G++G IAP+AIG IVGANIL GG FDGAS
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGAS 205          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.678e-59
Identity = 114/192 (59.38%), Postives = 143/192 (74.48%), Query Frame = 3
Query:  126 IAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            +A G+  ++    +L+A LAEF S L+FVFAG GS +A++KLT   A    GL++ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT++  + YWIAQLLGS  AC LLK+ TGGL     ++++G+ S   VV EI++TF LVYTVYATA DPKKG+LGTIAP+AIG IVGANILA G F G S
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.192e-59
Identity = 110/194 (56.70%), Postives = 146/194 (75.26%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGA--STPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  K+    +  ST  GL++ +LAHA  L VAV+V  N+SGGHVNPAVTFGA VGG ++L+R++LYW AQLLG+V A LLL+ +TGG     FAL+SGV   +AV+ E VMTFG VY  YAT VDPK+G+LGTIAP+A+GF++GAN+LAGG FDGA
Sbjct:   12 RFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGA 205          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.421e-58
Identity = 116/192 (60.42%), Postives = 144/192 (75.00%), Query Frame = 3
Query:  126 IAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            IA G   ++    +LKA +AEF S L+FVFAG GS +A++KLT G    PAGL++ ++ H F LFVAV++GANISGGHVNPAVTFG  +GG IT+L  + YWIAQLLG++V  +L++F T G+ T    L SGV ++  VV EI++TFGLVYTVYATA DPKKG+LGTIAPIAIGFIVGANIL  G F G S
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHGL-SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGS 194          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.424e-58
Identity = 109/196 (55.61%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            M   R + G   EA+HPD+++A+LAEF S  IFVFAG+GSG+A  K+    A +   L++ +LAHAFALF AVS   ++SGGHVNPAV+FGA +GG I+++R++ YWIAQLLGS+VA L+L+  T  +  S F +S GV   +  + E+VMTFGL+YTVY TA+DPK+G +  IAP+AIG IVGANIL GG FDGA
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGA 196          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51
Identity = 101/193 (52.33%), Postives = 133/193 (68.91%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            +I +G   EA+ PD +KA + EF +  +FVFAG GS MA   L     +T  GL + ++AHAF + V +S G +ISGGH+NPAVT G  +GGHI++ R+ LYWI QLL S  AC LL + TGG+ T    L+SGVS    +++EI++TF L++TVYAT VDPKKG+L    P+  GF+VGANILAGGAF GAS
Sbjct:    3 KIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLV---GNTLVGLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGAS 191          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 99/182 (54.40%), Postives = 126/182 (69.23%), Query Frame = 3
Query:  159 PDALKAALAEFFSMLIFVFAGQGSGMAFSKL-TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            P A +AAL+EF +  +FVFA +GS     K+  D G  T  GL+  ++AHA AL  AV+V  N SGGHVNPAVTFG  VG  I+  R+ LYW AQLLG+V+A LLL+ ++GG+    F L   +   +A++ E+VMTFGLVYTVYATAVD + G  G IAP+AIG + GANILAGG FDGA+
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTG--TLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAA 203          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 97/194 (50.00%), Postives = 126/194 (64.95%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLE-TSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            ++A+G   EA+ P  L+A +AE     +FVF+G GS MA +KL  GG  T  GL + + AHA  + V VS G ++SGGH+NPAVT G   GGHITL RS LY  AQLLGS +ACLLL   TGG E     A + GV +  AV  E V+TF L++ VYAT VD ++  +G + P+ +G +VGANILAGG + GAS
Sbjct:    3 KLALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKL-GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA-VGALGPLLVGLVVGANILAGGPYSGAS 194          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.202e-43
Identity = 94/194 (48.45%), Postives = 121/194 (62.37%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF-STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            + A+G   EAS    ++A LAE     +FVFAG GS MA  KL  GG  T  GL + +LAH   + V VS G ++SGGH+NPAVT G    G ITL RS LY  AQLLGS +ACLLL F +         AL +GV +   V+ E V+TF L++ VYAT VDP++  +G + P+ +G +VGAN+LAGG F GAS
Sbjct:    3 KFALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-VGGMGPLLVGLVVGANVLAGGPFSGAS 195          
The following BLAST results are available for this feature:
BLAST of FC930860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TIP22_ARATH6.814e-6161.14Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP32_ARATH3.382e-6056.70Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP21_ARATH1.678e-5959.38Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP32_MAIZE2.192e-5956.70Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP22_ORYSJ1.421e-5860.42Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU2.424e-5855.61Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP41_ARATH3.748e-5152.33Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_ORYSJ8.087e-4654.40Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP43_ORYSJ9.885e-4450.00Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE2.202e-4348.45Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34109G11EF PostHarvP1 Citrus clementina cDNA clone C34109G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930860 ID=FC930860; Name=FC930860; organism=Citrus clementina; type=EST; length=703bp
GACAAACCGCTACGCAATATAAAACGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATT
TTCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGG
CAAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATG
CTTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCT
AACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGG
CTCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCT
GGGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCA
CATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGAT
CAGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACA
TCGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTT
TGAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAG
TGGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGT
TTCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATC
AAT
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