FC930860

Overview
NameFC930860
Unique NameFC930860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930860_ssr457 microsatellite FC930860_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 64/181 (35.36%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 217          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGA 181          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGA 181          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD  AS P       G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS+G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 66/181 (36.46%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDG 695
            +A +AEF +M++F+F   GS + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA ++L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT    ++ +LG   P+AIGF V    L    + G
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTG 191          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 69/178 (38.76%), Postives = 99/178 (55.62%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTD----GGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + F   TD    GGA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++ Y +AQ LG+     L+K   ST     GG    A  LS G +    V  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFSV 211          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 65/181 (35.91%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS--------AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG+V    L+K    G ++S        A  L++G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   36 RAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVK----GFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 211          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 66/179 (36.87%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGA 181          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 62/175 (35.43%), Postives = 96/175 (54.86%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGAS----TPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD   +    T  G++  + A    +F+ V   A ISGGH+NPAVTFG  +   +TL+R+++Y +AQ LG++    L+K       T     A  LS G S    V  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   38 RALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 211          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 63/181 (34.81%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   +D   +T        G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G ++S +A        LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK----GFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFAV 216          
The following BLAST results are available for this feature:
BLAST of FC930860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
PIP23_MAIZE3.094e-2135.36Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
MIP_BOVIN3.094e-2136.87Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_SHEEP4.041e-2136.87Lens fiber major intrinsic protein OS=Ovis aries G... [more]
PIP25_MAIZE6.894e-2135.03Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
AQP1_SHEEP6.894e-2136.46Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
PIP26_ARATH9.003e-2138.76Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ9.003e-2135.91Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
MIP_RABIT9.003e-2136.87Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
PIP25_ARATH2.006e-2035.43Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ2.006e-2034.81Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC34109G11EF PostHarvP1 Citrus clementina cDNA clone C34109G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930860 ID=FC930860; Name=FC930860; organism=Citrus clementina; type=EST; length=703bp
GACAAACCGCTACGCAATATAAAACGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATT
TTCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGG
CAAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATG
CTTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCT
AACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGG
CTCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCT
GGGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCA
CATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGAT
CAGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACA
TCGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTT
TGAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAG
TGGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGT
TTCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATC
AAT
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