FC930860

Overview
NameFC930860
Unique NameFC930860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930860_ssr457 microsatellite FC930860_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 66/179 (36.87%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPA--------GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD  AS           G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG+V    L+K F +   +     A +L+SG S    +  EIV TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 219          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 64/177 (36.16%), Postives = 101/177 (57.06%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD  AS         G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K F +   +     A +L+SG S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDG 695
            +A +AEF +M++F+F   GS + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA  +L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIGF V    L    + G
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 64/179 (35.75%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG++    L+K      F+  G    A  L++G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYG--GGANTLAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 66/181 (36.46%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDG 695
            +A +AEF +M +F+F   GS + F        ++ A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++  L+S   GV S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIGF V    L    + G
Sbjct:   12 RAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGFSVALGHLLAIDYTG 190          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 63/171 (36.84%), Postives = 99/171 (57.89%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGG----LETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +AA+AEF + L+F++    + + + K TD  AS   GL+  + +    +FV V   A ISGGH+NPAVTFG F+   ++LLR+++Y IAQ  G++    L+K    G        A +++ G +   A   E++ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAV 207          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 61/182 (33.52%), Postives = 99/182 (54.40%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAG----LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDG 695
            +A +AEF +M++FVF   G+ + F+   +  A+   G    ++  SLA   ++        ++SG H+NPAVT G  +   I++L++++Y IAQ LG+VVA  +L   T GLE ++     LS GVS+   +  EI++TF LV  V A   D ++ ++    P+AIG  V    L    + G
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA-VTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTG 192          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 65/179 (36.31%), Postives = 93/179 (51.96%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            +A  AEFF+ L +VF G GS + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGA 179          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 65/179 (36.31%), Postives = 93/179 (51.96%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 698
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGA 181          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 60/177 (33.90%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  171 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 659
            +A +AEF + L+F++    + + +   +D GA+         G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
The following BLAST results are available for this feature:
BLAST of FC930860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
PIP22_MAIZE2.006e-2036.87Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_MAIZE2.620e-2036.16Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
AQP1_BOVIN2.620e-2037.02Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP21_ORYSJ3.421e-2035.75Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
AQP1_PIG3.421e-2036.46Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
PIP1_ATRCA4.468e-2036.84Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
AQPA_RANES4.468e-2033.52Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
MIP_RAT5.836e-2036.31Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_CAVPO5.836e-2036.31Lens fiber major intrinsic protein OS=Cavia porcel... [more]
PIP23_ORYSJ7.622e-2033.90Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC34109G11EF PostHarvP1 Citrus clementina cDNA clone C34109G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930860 ID=FC930860; Name=FC930860; organism=Citrus clementina; type=EST; length=703bp
GACAAACCGCTACGCAATATAAAACGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATT
TTCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGG
CAAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATG
CTTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCT
AACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGG
CTCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCT
GGGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCA
CATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGAT
CAGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACA
TCGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTT
TGAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAG
TGGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGT
TTCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATC
AAT
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