FC930863

Overview
NameFC930863
Unique NameFC930863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:229..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_TAEGU (Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.107e-48
Identity = 92/227 (40.53%), Postives = 153/227 (67.40%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED
Sbjct:   72 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRGEPPLPEED 296          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_BOVIN (Eukaryotic translation initiation factor 3 subunit H OS=Bos taurus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.486e-47
Identity = 93/229 (40.61%), Postives = 151/229 (65.94%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L + ++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S
Sbjct:   76 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKTLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLS 302          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_MOUSE (Eukaryotic translation initiation factor 3 subunit H OS=Mus musculus GN=Eif3h PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 92/229 (40.17%), Postives = 152/229 (66.38%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ ++++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L ++++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S
Sbjct:   76 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKASITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKSLQLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLS 302          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DICDI (Eukaryotic translation initiation factor 3 subunit H OS=Dictyostelium discoideum GN=eif3h PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.817e-45
Identity = 92/217 (42.40%), Postives = 147/217 (67.74%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQ--QQSWLQKRR-DENK 645
            LEV+NCFPFP +++++E     A+YQLEMMR LREVN+D+NTVGWY  T L  F    +IET  NYQ  I ++CV I+YDP +++QG L+ K  +L+ SFM+L++  +F+ E+L + NLS+ DIFE+IP+K+ NS LI+A + E +  +      +DRL +S++ +LE+ +E + +C++ L+ E  K     R++  Q+    QQ +L+ ++ DE++
Sbjct:   54 LEVSNCFPFPPRDQEDENSESIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQATINQKCVVIVYDPIKTSQGTLSLKCYRLTQSFMELFKDQSFSRERLDQANLSFNDIFEQIPIKIHNSQLINALLYEFDGASNNLTNSFDRLNISNNIYLEKVVEGMTDCLESLNQELNKVYINQRNIQTQKTNYIQQKFLEGQKVDEDE 270          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_EMENI (Eukaryotic translation initiation factor 3 subunit H OS=Emericella nidulans GN=AN1270 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 101/266 (37.97%), Postives = 146/266 (54.89%), Query Frame = 1
Query:    4 VLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRD----------------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            VLE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++DPSRS QG+L+ +A +LS  FM  ++ N FT ++L++ NL + DI  E+PV++ NS LI++F+ +L+  T  T  +                      +D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+QA+  +W  KR+ EN  R    + PLPE++
Sbjct:   46 VLEITNTFPFPVVEVPPESHFDNAAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDPSRSAQGSLSLRAFRLSPKFMAAFKDNKFTSDELQKSNLKYQDILVELPVEIHNSHLITSFIHQLQNQTQATPAEIPTSLATLESSPFAKQTILAPNFDNLSLSIDPFLEKNCDLLLDSIETHHTETSNFQYYQRSLAREQAKITAWQAKRKAENATRATLKQPPLPEDE 311          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPCL (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus clavatus GN=ACLA_025520 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 101/265 (38.11%), Postives = 147/265 (55.47%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFM-----------TELEP-----------DTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TN FPFP+ E   E   + A                YQ EM+R LREVNVD N VGWY S  +G F    ++E    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++ NL + DIF E+PV++ NS LI++F+           TEL P           ++ +   +YD L LS  PFLE+N + L++ M+    E   FQ+Y RSL R+Q +  +W QKR+ EN  R    +  LPE++
Sbjct:   46 LEITNSFPFPVLEVPSESHFENAPTNPAAAAPRAKGNAAYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVVENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSNLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPTPTELPPSLAALESGPFVNSTILAPNYDNLTLSIDPFLEKNCDLLLDSMETHHTETNNFQYYQRSLAREQQRISAWQQKRKQENATRATLKQPLLPEDE 310          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_NEOFI (Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_015650 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 101/265 (38.11%), Postives = 147/265 (55.47%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P                     +   +YD L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN  R A  +  LPE++
Sbjct:   28 LEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPRFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTDLPPSLAALESGPFVKSSILAPNYDNLTLSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDE 292          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPTN (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_00190 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 101/265 (38.11%), Postives = 146/265 (55.09%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADG-------------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-------PDTP---------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TN FPFP+ E   E   D              AN  YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI+ F+ +L+        D P               +   +YD L LS  PFLE+N + L++ ++  + E   FQ+Y RS TR+Q +   W+ KR+ EN +R    + PLPE++
Sbjct:   46 LEITNSFPFPVVEMPAESHFDNTAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQYFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSPKFMAAFKENKFTAEELQKSGLRYQDIFVELPVEIHNSHLITTFLHQLQCPRQSAPTDLPPSLAALESGPFVKDTILAPNYDNLSLSIDPFLEKNCDLLLDSIETHNTETNNFQYYQRSFTREQTKINQWIAKRKAENASRATLKQPPLPEDE 310          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFU (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus GN=AFUA_1G09970 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 100/265 (37.74%), Postives = 147/265 (55.47%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P                     +   ++D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN  R A  +  LPE++
Sbjct:   46 LEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDE 310          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_009410 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 100/265 (37.74%), Postives = 147/265 (55.47%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P                     +   ++D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN  R A  +  LPE++
Sbjct:   46 LEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDE 310          
The following BLAST results are available for this feature:
BLAST of FC930863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
EIF3H_TAEGU5.107e-4840.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOVIN1.486e-4740.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MOUSE4.324e-4740.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DICDI1.817e-4542.40Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_EMENI2.372e-4537.97Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPCL1.538e-4438.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEOFI4.474e-4438.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPTN9.968e-4438.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFU9.968e-4437.74Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFC9.968e-4437.74Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34109H02EF PostHarvP1 Citrus clementina cDNA clone C34109H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930863 ID=FC930863; Name=FC930863; organism=Citrus clementina; type=EST; length=704bp
AGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGA
CGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGT
GTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCA
ACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAA
CTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAA
GGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCC
TTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGA
GAAAAATTTATCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCT
CAAATTCTGCACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACT
CCAGTCACACAGCGTGATTACGACCGCCTGCAATTGTCAAGCAGTCCATT
CTTGGAGAGGAATATGGAATTTTTGATTGAATGCATGGATGATTTGTCAG
TGGAACAACAAAAGTTCCAATTTTACTATCGAAGCCTAACACGTCAGCAA
GCTCAGCAGCAATCATGGCTTCAGAAGAGAAGGGATGAGAATAAGGCACG
TAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAGGATCCTTCAATCCCAT
CTTT
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