FC930863

Overview
NameFC930863
Unique NameFC930863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:229..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_CULQU (Eukaryotic translation initiation factor 3 subunit H OS=Culex quinquefasciatus GN=CPIJ005299 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 86/227 (37.89%), Postives = 135/227 (59.47%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+   FT E LR   + + ++F E+P+ + NSAL +  M+EL    P  +  +  L L ++  LE ++  +++ +D+L+ E  KF  Y +++ RQ+  +   L K   EN AR A GE  +P+++
Sbjct:   59 LEITNCFPFP-KSSDETIDEE--EYQLNMMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSKRGFLTLKAYRLTPQAIAMYKEGEFTPEALRNLKVGYENLFLEVPIVIKNSALCNIMMSELAEMVPEEEGTH-FLDLGTASVLENHLRSMMDRVDELNQEANKFNKYQQTVIRQEQDKHRMLAKHAQENAARIAKGETAIPDDE 281          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_MAGGR (Eukaryotic translation initiation factor 3 subunit H OS=Magnaporthe grisea GN=MGG_05156 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 92/268 (34.33%), Postives = 143/268 (53.36%), Query Frame = 1
Query:    1 SVLEVTNCFPFPI----------QEEDEEIEADGAN-------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVT-------------QRD---------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            +++EVTN   FP            E D   +A  A        YQ EM++ LREVNVD N VGWY S  +G F T   IE   +YQ    + + +++D SRS+Q +L+ +A +LS +FM   + N FT E L++  L++ DI  E+PV + NS L++ ++ ++ P  P               QR+          D L+LS  PFLE+  + L++ ++    +    Q+Y R +TR+QA+  +W  KR+ EN AR AA +EPLP+++
Sbjct:   46 TLVEVTNSLNFPTVDVANVDSHQSERDASAQAAAAPRSKANLMYQAEMIKHLREVNVDANCVGWYTSATMGNFVTMSFIENQAHYQRENPKAIALVHDVSRSSQASLSLRAFRLSTAFMTALKENKFTTENLQKTKLTYKDILIEMPVVIHNSHLLTTYLHQI-PSAPAAGSETTIPTSLAALQREPVNIPPYPSIDSLELSIDPFLEKTCDLLLDSIEAHYTDLNNHQYYQRQMTREQAKITAWQAKRKAENAARAAAKQEPLPDDE 312          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_SCLS1 (Eukaryotic translation initiation factor 3 subunit H OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_01190 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 92/266 (34.59%), Postives = 141/266 (53.01%), Query Frame = 1
Query:    7 LEVTNCFPFPIQE-------EDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQ-ENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDY--------------------DRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            L++TN FPFP  +        ++ + A           AN  YQ EM++ L+EVNVD N VGWY S  +G F    LIE    YQ E   R V +++D SRS QGAL+ +A +LS +FM  Y+   FT E +++  L++ DI  E+P+ V NS L+++F+ ++  + P  + D+                    + L LS  P+LER  + L++ ++    E   FQ++ R LTR+QA+  +W  KR  EN +R      PLPE++
Sbjct:   49 LQITNSFPFPTADVAASDSHPNDHMAASNIAAAAPRSKANIVYQSEMIKMLKEVNVDANNVGWYTSANMGNFINTSLIENQFFYQKEPNERTVALVHDVSRSAQGALSLRAFRLSPNFMTAYKEGKFTTENMQKSKLTYKDILVELPIIVHNSHLLTSFLHQMPVELPKKELDFPASLADLTRNTPPTPLYPNLESLDLSIDPYLERTCDMLLDSIETHYTELNNFQYFQRQLTREQAKVTAWKTKRAAENASRATQKLAPLPEDE 314          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_BOTFB (Eukaryotic translation initiation factor 3 subunit H OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_03240 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.013e-36
Identity = 92/266 (34.59%), Postives = 140/266 (52.63%), Query Frame = 1
Query:    7 LEVTNCFPFPIQE-------EDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQ-ENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDY--------------------DRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            L++TN FPFP  +        ++ + A           AN  YQ EM++ L+EVNVD N VGWY S  +G F    LIE    YQ E   R V +++D SRS QGAL+ +A +LS +FM  Y+ + FT E +++  L++ DI  E+P+ V NS L+++F+ ++  + P    D+                    + L LS  P+LER  + L++ ++    E   FQ++ R LTR+QA+  +W  KR  EN  R      PLPE++
Sbjct:   49 LQITNSFPFPTTDVATSDSHPNDHMAASNIAAAAPRSKANVIYQSEMIKMLKEVNVDANNVGWYTSANMGNFINTSLIENQFFYQKEPNERTVALVHDVSRSAQGALSLRAFRLSPTFMAAYKESKFTTENMQKSKLTYKDILVELPIIVHNSHLLTSFLHQMPVELPKKDLDFPASFADLNRNTPPTPLYPNMESLDLSIDPYLERTCDMLLDSIETHYTELNNFQYFQRQLTREQAKVTAWKAKRTAENATRATQKLAPLPEDE 314          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DROGR (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila grimshawi GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 83/227 (36.56%), Postives = 132/227 (58.15%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE +  D   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+ ++FT E  R   + +  +F EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+
Sbjct:   58 LEITNCFPFP-KSGDETM--DDETYQLTVMRHLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDSDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQESVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEE 280          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DROVI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila virilis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 82/227 (36.12%), Postives = 132/227 (58.15%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+
Sbjct:   58 LEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEE 280          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DROMO (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila mojavensis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 82/227 (36.12%), Postives = 132/227 (58.15%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+
Sbjct:   58 LEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEE 280          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DROME (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila melanogaster GN=eIF-3p40 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 82/227 (36.12%), Postives = 132/227 (58.15%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + + ++F EIP+ + NS L +  M+EL    P   + ++ L L ++  LE  M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+
Sbjct:   59 LEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEE 281          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DROAN (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila ananassae GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 82/227 (36.12%), Postives = 132/227 (58.15%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P   + ++ L L ++  LE +M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+
Sbjct:   58 LEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEE 280          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_DROER (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila erecta GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 82/227 (36.12%), Postives = 131/227 (57.71%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P   + ++ L L ++  LE  M  LIE +D+L  E  ++  Y + + +Q  ++   L K   EN  R + GE  +PEE+
Sbjct:   59 LEITNCFPFP-KSGDETMDEE--LYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP-EDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLAAENAVRTSKGEPTVPEEE 281          
The following BLAST results are available for this feature:
BLAST of FC930863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
EIF3H_CULQU2.809e-3837.89Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MAGGR3.106e-3734.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SCLS19.036e-3734.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOTFB2.013e-3634.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROGR1.704e-3536.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROVI6.476e-3536.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROMO6.476e-3536.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROME6.476e-3536.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROAN6.476e-3536.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROER1.105e-3436.12Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34109H02EF PostHarvP1 Citrus clementina cDNA clone C34109H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930863 ID=FC930863; Name=FC930863; organism=Citrus clementina; type=EST; length=704bp
AGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGA
CGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGT
GTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCA
ACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAA
CTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAA
GGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCC
TTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGA
GAAAAATTTATCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCT
CAAATTCTGCACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACT
CCAGTCACACAGCGTGATTACGACCGCCTGCAATTGTCAAGCAGTCCATT
CTTGGAGAGGAATATGGAATTTTTGATTGAATGCATGGATGATTTGTCAG
TGGAACAACAAAAGTTCCAATTTTACTATCGAAGCCTAACACGTCAGCAA
GCTCAGCAGCAATCATGGCTTCAGAAGAGAAGGGATGAGAATAAGGCACG
TAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAGGATCCTTCAATCCCAT
CTTT
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