FC930867

Overview
NameFC930867
Unique NameFC930867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15226 contig Ccv1_Contig15226:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: Y461_VIBCH (UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0461 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 65/198 (32.83%), Postives = 90/198 (45.45%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDD-----LEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQ 695
            +  +  ++  A ++  R    ++++AVSKTKPV  I +  +AG R FGENYVQE V+K     +      LEWHFIG LQSNK +                 L+A  F                                  V ++  EKIA RL+     +   PL+VL+QVNTSGE SKSG+EP     L +  S+
Sbjct:    8 IEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTR-----------------LVAEHF--------------------------------DWVHTIDREKIALRLSEQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISR 155          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 61/191 (31.94%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKH 686
            L  V++R+ +A ER+ R  +  +++  SKT P  VIR+ Y  G + +GEN VQE ++K   L D DLEWHFIG LQ+NKVK L+G +     LD K+                                A  +   A   ++V +                   VL++VN  GEE+K GVEP    EL ++
Sbjct:    7 LSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKVVLIHSLDRKN-------------------------------LADEIQKRAFKNNIVQD-------------------VLIEVNVGGEETKGGVEPENLKELFEY 147          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: YBD6_YEAST (UPF0001 protein YBL036C OS=Saccharomyces cerevisiae GN=YBL036C PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 59/161 (36.65%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  177 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLN--RMVETMGRKPLKVLVQVNTSGEESKSGV 653
            +I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K L                                               A VPNL  VE++ + K A +LN  R        P+   VQ+NTS E+ KSG+
Sbjct:   41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDL-----------------------------------------------AKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGL 154          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 67/201 (33.33%), Postives = 89/201 (44.28%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRI 707
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSN                 KS L+A  F                      +C            ++   +IA RLN         PL VL+Q+N S E SKSG++ +   EL    ++  R+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSN-----------------KSRLVAEHF---------------------DWC-----------HTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRL 158          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 67/201 (33.33%), Postives = 89/201 (44.28%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRI 707
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSN                 KS L+A  F                      +C            ++   +IA RLN         PL VL+Q+N S E SKSG++ +   EL    ++  R+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSN-----------------KSRLVAEHF---------------------DWC-----------HTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRL 158          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 67/201 (33.33%), Postives = 89/201 (44.28%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRI 707
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSN                 KS L+A  F                      +C            ++   +IA RLN         PL VL+Q+N S E SKSG++ +   EL    ++  R+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSN-----------------KSRLVAEHF---------------------DWC-----------HTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRL 158          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 65/205 (31.71%), Postives = 89/205 (43.41%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGR--KPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRILSF 716
            L ++I+ V  A   +S+   R R+VAVSKTK   +I   Y    R FGENYVQE+ EK+  L     D+ WHFIG +QSNK+  +                                                  P L  VE+V  EK A   ++     G    PL+VLVQVNTSGE++K G+E     +L +   +  + L F
Sbjct:   10 LFNIIEAVADAVT-ASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKICNS-----------------------------------------------PGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKF 166          
The following BLAST results are available for this feature:
BLAST of FC930867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
Y461_VIBCH7.518e-1832.83UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0... [more]
Y274_AQUAE6.365e-1731.94UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
YBD6_YEAST2.419e-1636.65UPF0001 protein YBL036C OS=Saccharomyces cerevisia... [more]
YGGS_ECOLI5.388e-1633.33UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL65.388e-1633.33UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO575.388e-1633.33UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
PROSC_CAEEL3.492e-1531.71Proline synthetase co-transcribed bacterial homolo... [more]

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Properties
Property NameValue
Genbank descriptionC34109H06EF PostHarvP1 Citrus clementina cDNA clone C34109H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930867 ID=FC930867; Name=FC930867; organism=Citrus clementina; type=EST; length=726bp
GGAAGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCATATC
AACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGG
CGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCG
CCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGC
AAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCG
ATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGC
TTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAA
GTGAAACCTTTATTGGGTGATATTCATGGACAACCTTTTCTTGATTAAAA
GTCAAATCTAATTGCATCTGCATTTTGTGTCGCACAACTTTATCTCACAT
TCATGAGAGAATAAAATATGATGTCTGATTTAAAACTCATCTACTGTTTT
GCAGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGTCAACGAGAA
GATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAAGGAAGCCTT
TAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCGAAATCTGGA
GTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGNTAGTCAAACTGT
CCGAATCTTGAGTTTTGTGGCCTATG
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