FC930868

Overview
NameFC930868
Unique NameFC930868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15085 contig Ccv1_Contig15085:7..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930868 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.666e-57
Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 3 
Query:  150 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE 647
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +GD  GN +G GF+LLD E
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGE 168
The following BLAST results are available for this feature:
BLAST of FC930868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_XENTR7.666e-5760.84Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionC34109H07EF PostHarvP1 Citrus clementina cDNA clone C34109H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930868 ID=FC930868; Name=FC930868; organism=Citrus clementina; type=EST; length=696bp
GGTGTGATTGCGTTCTTATCAGCCATTCGCTTCCTATCTTGATCTTTCTT
CAAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTTCTTGTAAGAAATGGC
AACTGATACTGTGGCGGCTGAACACCGGTCGAGCAATAATGGGCATGGTT
GCTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGTCTGGT
CCTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTGGAAG
AGAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCTTCTT
CTTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGTGATGAA
CTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATTCATC
TGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCGTATAT
ACGTAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATAAAGTT
GTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCTCACAC
GGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGGAGATA
AGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCAGAATTC
ATGTGAAAGGAGATGGGAAAAACAGGTCACAGTCCTGCTTTCGGTT
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