FC930874

Overview
NameFC930874
Unique NameFC930874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_PAPAN (High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_MACFA (High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_HUMAN (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_HORSE (High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 130
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_CANFA (High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_CALMO (High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
[Close]
BLAST of FC930874 vs. ExPASy Swiss-Prot
Match: HMGB1_CALJA (High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  197 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 424
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
The following BLAST results are available for this feature:
BLAST of FC930874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HMGB1_RAT1.539e-1247.37High mobility group protein B1 OS=Rattus norvegicu... [more]
HMGB1_PAPAN1.539e-1247.37High mobility group protein B1 OS=Papio anubis GN=... [more]
HMGB1_MOUSE1.539e-1247.37High mobility group protein B1 OS=Mus musculus GN=... [more]
HMGB1_MACFA1.539e-1247.37High mobility group protein B1 OS=Macaca fascicula... [more]
HMGB1_HUMAN1.539e-1247.37High mobility group protein B1 OS=Homo sapiens GN=... [more]
HMGB1_HORSE1.539e-1247.37High mobility group protein B1 OS=Equus caballus G... [more]
HMGB1_CRIGR1.539e-1247.37High mobility group protein B1 (Fragment) OS=Crice... [more]
HMGB1_CANFA1.539e-1247.37High mobility group protein B1 OS=Canis familiaris... [more]
HMGB1_CALMO1.539e-1247.37High mobility group protein B1 OS=Callicebus moloc... [more]
HMGB1_CALJA1.539e-1247.37High mobility group protein B1 OS=Callithrix jacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110A01EF PostHarvP1 Citrus clementina cDNA clone C34110A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930874 ID=FC930874; Name=FC930874; organism=Citrus clementina; type=EST; length=702bp
GATTCACATCTGCGTCTCTCTCTTTTTCTCTTTCCTCTTTTTCTCTCATT
TGAAGCCCTAACCCTAGCTCTATCTTTCTTCAGAAACAGGATTTGAAATG
AAAGGAGGTAAATCAAAGTCAGACACCAGAAACGCCAAGCTCTCTGTGAA
CAAGAAGCCTGCCAAAGCTGGACGAAAATCGGGAAAGGCAGCTAAGGACC
CGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTTTGTTTTCATGGAAGAA
TTCCGTGAACAATACAAGAAGGATCATCCTAAGAACAAATCAGTTGCTGC
TGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGATA
AAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAGGTTGAGTATGAGAAG
GATATGAAAAACTACAATAGGAGACAGGCGGAGGGAACTAAGCCGGAGGA
AGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTGAATGATGAGGATGATG
ATGAAGAAGGCAGTGGCGAGGAGGATGATGATGAATAGAAGTTGAAGGAA
GAAATTAGCATAGTCATGTTAGGCTGTGACAATGTTTCAAACAACATATG
TTAATGCTTTGTGCTTCCATGTTAATTTTTTTGGATGCTTTCATCATCTT
CATCATCATGTAAGAGAATCATGTTGCTTCTCCCTCGACATTTTCTTATG
CC
back to top