FC930875

Overview
NameFC930875
Unique NameFC930875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  179 AEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            AE    L+ V  G GS     ++++G       ++  +L   F +   V    ++SG H+NPAVT G  V GHI++L++I Y I Q +G++    +LK  T         ++S   GV+     + E  +TF L+  V +   D +K NLG  AP+ +G  +    LA  ++ G+SM
Sbjct:   31 AELIGTLLLVLIGTGSCTGV-QISEGDV-----VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTLCMTSLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSM 200          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 57/182 (31.32%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  137 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL-----KFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            P E +     +A +AEF +  +F++    + M   +  +       G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R+I Y + Q+LG++    ++     K   G L   A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   45 PSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVR--ESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 223          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  137 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            PGE S     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K         L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 219          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  137 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            PGE S     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K         L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 219          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 57/171 (33.33%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF +  +F++    + M  +K     A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y   Q LG++    ++K F  G   G    A A++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVNKSASKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 221          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  137 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            PGE +     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K         L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 219          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 57/198 (28.79%), Postives = 98/198 (49.49%), Query Frame = 2
Query:  128 IGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKL--TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +G      + +  +  +AEF      V  G GS   ++    T    +   GL+ A+LA AF          ++SG H+NPAVT G  V   +++L+   Y ++Q +G++    ++K +T     GGL  +  A   G+S+   V+ E ++TF LV+ V+    D ++ ++   AP+ IG  + A  LA  ++ GASM
Sbjct:   11 VGVSDITENRNIWRMLVAEFLGTFFLVAIGIGSTTGWTDYSPTLTQIAFTFGLVVATLAQAFG---------HVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVGGLGVTGIA--PGLSTGQGVLIEALITFMLVFVVHGVC-DNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASM 196          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 56/171 (32.75%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS----AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF +  +F++    + M  SK      +   G+   + A    +F  V   A +SGGH+NPAVTFG  +   ++L R++ Y + Q LG+V    ++K     L  S    A A+S G +  + +  E+V TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   60 RAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTV--GIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVF-SATDAKRTARDSHVPALAPLPIGFAV 227          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 57/204 (27.94%), Postives = 98/204 (48.04%), Query Frame = 2
Query:  128 IGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPA--------GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +G      + +  +  +AEF      V  G GS M +     GG   P         GL+ A+LA AF          ++SG H+NPAVT G  +   I++L+   Y ++Q +G++    L+K +T     GGL  +   +   +++   V+ E ++TF LV+ V+    D ++ ++   AP+ IG  + A  L+  ++ GASM
Sbjct:   11 VGVADITENRNIWRMLVAEFLGTFFLVSIGIGSTMGW-----GGDYAPTMTQIAFTFGLVVATLAQAFG---------HVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPSDVIGGLGVT--GIDPRLTAGQGVMIEALITFILVFVVHGVC-DNRRSDIKGSAPLAIGLSITAGHLSAIKYTGASM 197          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 66/199 (33.17%), Postives = 88/199 (44.22%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP---------AGL---ISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL-------KFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPK--KGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            K  +AEF    I VF G GS      +  GG S            GL   ++  LA  FA+  ++    NISG H+NPAVT G +          + Y IAQLLG+     +          + GGL   A A   G+S W A++ E+V TF L+ T+   AVD +  KG     A I IG  V   I   G   G+S+
Sbjct:    6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGL--GATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG----FAGIIIGLTVAGIITTLGNISGSSL 198          
The following BLAST results are available for this feature:
BLAST of FC930875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
AQP_CICVR7.382e-1530.51Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
PIP2_PEA9.642e-1531.32Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_VICFA9.642e-1532.04Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH9.642e-1532.04Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP13_ORYSJ1.259e-1433.33Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_ARATH1.259e-1431.49Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
AQP_ANOGA1.645e-1428.79Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
PIP16_MAIZE2.148e-1432.75Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
AQP_AEDAE4.785e-1427.94Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
AQPM_METTM4.785e-1433.17Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]

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Properties
Property NameValue
Genbank descriptionC34110A02EF PostHarvP1 Citrus clementina cDNA clone C34110A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930875 ID=FC930875; Name=FC930875; organism=Citrus clementina; type=EST; length=700bp
GACCGCTACGCAATATAAAACGGCGTACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCG
ATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAG
CCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGCTTA
TTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACG
GATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTCA
TGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGG
GTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATT
ACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAGT
TGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCGG
CATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTGAG
ATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTGGA
TCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTTGCATCGGTTTCA
TTGTTGGTGCCAACATTTTGGCTGGTGGGCGCTTTGATGGTGCATCAATG
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