FC930875

Overview
NameFC930875
Unique NameFC930875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +A LAEF   L++   G G+ + +       A  P G++ ++LA   A    V    ++SGGH+NPA+T    +   ++L R++ Y +AQLLG++    +L   T         LS+    V      V E+++T   +  V+A+  D   G  G+ A + +GF +    L G  F GA M
Sbjct:   11 RAILAEFLGSLLYTLLGLGASLRW-------APGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGRPGS-AALPVGFSLALGHLFGIPFTGAGM 183          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 52/154 (33.77%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  254 GGASTPAGLISASLAHAFALFVA-VSVG-ANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWN---AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            G  ST +G +   +A  F L VA ++ G  ++SG H+NPAVT G  + G I++L++  Y I Q +G++    ++K +  G+      +SS   S N   AV+ E ++TF LV+ V A + DP + ++   AP+ +G  + A  L   +  GASM
Sbjct:   40 GVGSTTSGSVP-QIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVS-DPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASM 191          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 55/181 (30.39%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  176 LAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF----STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +AE       V  G GS       T G   +P+      +A  F L VA    A  +ISG H+NPAVT G  + G +++++S+LY   Q +G++    ++K     +  GL+    + SS ++   AV+ E ++TF LV  V   + DP + ++   AP+ +G  + A  L   +  GASM
Sbjct:   27 MAELIGTFFLVVIGVGS------CTGGSEWSPS---IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVS-DPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASM 197          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 61/181 (33.70%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVV-ACLLLKFSTGGLETS--AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            KA  AEF +  ++VF G GS + +        + P+ ++  ++    A   AV +    SG H NPAVT    VG HI+L R++ Y  AQL G+ V A LL   + GG+  +     + +  S+  AV  E+V+T  LV  V+A+     +  LG+ A + IG  V    L G  F G SM
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLPWP------VALPS-VLQVAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASM--DSRQTLGSPAAM-IGTSVALGHLIGIYFTGCSM 192          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 52/186 (27.96%), Postives = 85/186 (45.70%), Query Frame = 2
Query:  155 PDALKAALAEFFSMLIFVFAGQG----SGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            P  LK  ++E  +  + VF   G    SG   S+++  G S   GLI   + +A           +ISG H+NPAVT    V  H   ++   YW AQ  G++ A  +LK     ++        G   W+++V E+++TF +++   A A D +   +G +A + +G  V    +  G   G SM
Sbjct:   45 PHLLKKVVSEVVATFLLVFMTCGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVG---------HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIHPVDVIGTTTPVG-PHWHSLVVEVIVTFNMMFVTLAVATDTRA--VGELAGLAVGSAVCITSIFAGAISGGSM 218          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 53/186 (28.49%), Postives = 84/186 (45.16%), Query Frame = 2
Query:  155 PDALKAALAEFFSMLIFVFAGQGS----GMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            P  LK  ++E  S  + VF   G+    G    +++  G S   GLI   + +A           +ISG H+NPAVT    V  H   ++   YW AQ  GS+ A  +LK     +        +G   W+++V EI++TF +++   A A D +   +G +A + +G  V    +  G   G SM
Sbjct:   43 PHLLKKVVSEVVSTFLLVFVTCGAAGIYGSDKDRISQLGQSVAGGLIVTVMIYAVG---------HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGSICASFVLKAVLHPIAVLGTTTPTG-PHWHSLVIEIIVTFNMMFVTLAVATDTRA--VGELAGLAVGSAVCITSIFAGAVSGGSM 216          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 56/175 (32.00%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  176 LAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +AE       +FAG  + +A +K T G  + P   I+  LA    + +  SVG +ISG H+NPAVT      G     R   Y  AQ+ GS  A   L+   GG     F  +   S   ++  E ++TF L++ V   A D +   +G +A + +G  V  N+L  G   GASM
Sbjct:   57 IAEILGTFFLIFAGCAA-VAVNKRTGGTVTFPGICITWGLA---VMVMVYSVG-HISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVATDNRA--IGELAGLAVGATVLVNVLFAGPISGASM 224          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 2
Query:  155 PDALKAALAEFFS--MLIFVFAGQGS--GMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            P+ LK  ++E  +  +L+FV  G  S  G    +++  G S   GLI   + +A           +ISG H+NPAVT       H   ++   YW AQ  G++ A  +L+     +E       +G   W+A+V EIV+TF +++   A A D +   +G +A + +G  V    +  G   G SM
Sbjct:   48 PNLLKKVISEVVATFLLVFVTCGAASIYGEDMKRISQLGQSVVGGLIVTVMIYATG---------HISGAHMNPAVTLSFAFFRHFPWIQVPFYWAAQFTGAMCAAFVLRAVLYPIEVLGTTTPTG-PHWHALVIEIVVTFNMMFVTCAVATDSRA--VGELAGLAVGSAVCITSIFAGPVSGGSM 221          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 54/168 (32.14%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  179 AEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL--------KFSTGGLETSAFALSS--GVSSWNAVVFEIVMT-FGLVYTVYATAVDPKKGNLGTIAPICIGF 649
            AEFF     VF G GS +  +   + G     G +  +LA    +         ISGGH NPAV+ G  V G +     I YW+AQ+LG++ A  +L         FS GGL ++ +   S  G S    ++ EI++T F ++  + +T+     G     API IGF
Sbjct:    7 AEFFGTFWLVFGGCGSAILAAAFPELGI----GFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG----FAPIAIGF 166          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 54/168 (32.14%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  179 AEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL--------KFSTGGLETSAFALSS--GVSSWNAVVFEIVMT-FGLVYTVYATAVDPKKGNLGTIAPICIGF 649
            AEFF     VF G GS +  +   + G     G +  +LA    +         ISGGH NPAV+ G  V G +     I YW+AQ+LG++ A  +L         FS GGL ++ +   S  G S    ++ EI++T F ++  + +T+     G     API IGF
Sbjct:    7 AEFFGTFWLVFGGCGSAILAAAFPELGI----GFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG----FAPIAIGF 166          
The following BLAST results are available for this feature:
BLAST of FC930875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MIP_CHICK8.162e-1429.28Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP_DROME8.162e-1433.77Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
AQP_HAEIX1.392e-1330.39Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP6_RAT1.818e-1333.70Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
NIP21_ORYSJ2.375e-1327.96Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
NIP21_MAIZE2.375e-1328.49Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
NIP13_ORYSJ3.102e-1332.00Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP22_ORYSJ5.290e-1329.03Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
AQPZ_BRUME9.024e-1332.14Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ_BRUAB9.024e-1332.14Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34110A02EF PostHarvP1 Citrus clementina cDNA clone C34110A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930875 ID=FC930875; Name=FC930875; organism=Citrus clementina; type=EST; length=700bp
GACCGCTACGCAATATAAAACGGCGTACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCG
ATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAG
CCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGCTTA
TTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACG
GATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTCA
TGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGG
GTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATT
ACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAGT
TGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCGG
CATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTGAG
ATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTGGA
TCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTTGCATCGGTTTCA
TTGTTGGTGCCAACATTTTGGCTGGTGGGCGCTTTGATGGTGCATCAATG
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