FC930875

Overview
NameFC930875
Unique NameFC930875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930875_ssr453 microsatellite FC930875_ssr453:453..464. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  179 AEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            AEF    I +F    + +   K   GGA +P G  +A+ A      V +S G +ISG H+NP++T       H   L+   Y   Q L SV A   LK     F +GG+        + VS+  A   E +++F L++ V A A D +   +G +A I +G  V  NIL  G   G SM
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKY--GGAISPFG--NAACAGLAVATVILSTG-HISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGVFHPFLSGGVTVP----DATVSTAQAFFTEFIISFNLLFVVTAVATDTRA--VGELAGIAVGAAVTLNILVAGPTTGGSM 245          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 48/179 (26.82%), Postives = 81/179 (45.25%), Query Frame = 2
Query:  164 LKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            ++  +AE F     +FAG G+ +  ++  +G  + P      ++    A+ V V    +ISG H NPAVT            +   Y  AQ+LG+ +A   L+   GG            S   ++V E ++TF L++ +   A D +   +G +A + +G  +  N+L  G   GASM
Sbjct:   47 IQKIIAEIFGTYFLIFAGCGA-VTINQSKNGQITFPG----VAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPGTLPAGSDVQSLVLEFIITFYLMFVISGVATDNRA--IGELAGLAVGATILLNVLIAGPISGASM 218          
The following BLAST results are available for this feature:
BLAST of FC930875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
NIP31_MAIZE8.446e-1132.40Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
NIP11_ORYSJ8.446e-1126.82Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC34110A02EF PostHarvP1 Citrus clementina cDNA clone C34110A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930875 ID=FC930875; Name=FC930875; organism=Citrus clementina; type=EST; length=700bp
GACCGCTACGCAATATAAAACGGCGTACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCG
ATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAG
CCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGCTTA
TTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACG
GATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTCA
TGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGG
GTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATT
ACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAGT
TGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCGG
CATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTGAG
ATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTGGA
TCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTTGCATCGGTTTCA
TTGTTGGTGCCAACATTTTGGCTGGTGGGCGCTTTGATGGTGCATCAATG
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