FC930875

Overview
NameFC930875
Unique NameFC930875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930875_ssr453 microsatellite FC930875_ssr453:453..464. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 60/175 (34.29%), Postives = 95/175 (54.29%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP----AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF + L+F++    + + +   TD  A        G++  + A    +FV V   A ISGGH+NPAVT G F+   ++L+R++LY +AQ LG++  C  +K       T     A  L+ G +    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +A LAEF + L+FVF G GS + + +           ++  ++A   A+   V    ++SG H+NPAVT    VG H++ LR++ Y  AQLLG+V    LL   T      + +  AL++  ++  AV  E+ +T  LV  ++A+  + +  N+GT A + IGF V    L G  + G SM
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALNWPQALPS-------VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPA-LSIGFSVALGHLLGIHYTGCSM 183          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +A +AEF +M +FVF   GS + F+   +   +     +  SLA   ++        +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+ IG  V    L    + G  +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGI 191          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 64/175 (36.57%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGS--GMAFSKLTDGGASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF + L+F++    +  G      TD G     G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+   ++L R++LY IAQ LG++     +K       T     A +L+ G S+   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   39 RAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 212          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +A +AEF +M +FVF   GS + F+   +   +     +  SLA   ++        +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+ IG  V    L    + G  +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGI 191          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 58/181 (32.04%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            +A +AEF +M +FVF   GS + F        +     +  SLA   ++        +ISG H+NPAVT G  +   I++ R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+ IG  V    L    + G  +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGI 191          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 56/173 (32.37%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF + L+F++    + + +   +        G +  + A    +F+ V   A ISGGH+NPAVTFG  +   ++++R+++Y +AQ LG +V   ++K      ++  G    A  ++SG S+  A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANG--GGANMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 207          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 61/171 (35.67%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF + L+F++    + +     T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L R++ Y +AQ LG++    L+K         L   A  ++ G S+  A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 203          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 59/175 (33.71%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTD---GGASTPA-GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF + L+F++    + + +   +D   GG      G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++     +K F +   +     A +L+ G ++   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 59/172 (34.30%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAF-SKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSV----VACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            +A +AEF + LIF++    + + + ++     A T  G +  + +    +FV V     +SGGH+NPAVT G F G  ++L+R++LY +AQ LG++    +   ++K     L   A  +S G S+  A+  EIV TF LVYTV+ +A DPK+      +  + P+ IGF V
Sbjct:   44 RALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVF-SATDPKRTARDSFIPVLVPLPIGFAV 214          
The following BLAST results are available for this feature:
BLAST of FC930875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
PIP24_ARATH1.101e-1834.29Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
AQP2_BOVIN1.101e-1833.15Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQP1_MOUSE1.101e-1832.60Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
PIP21_ARATH1.437e-1836.57Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
AQP1_RAT1.437e-1832.60Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_PONAB3.202e-1832.04Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
PIP26_ORYSJ4.182e-1832.37Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH5.462e-1835.67Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH7.134e-1833.71Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP27_ORYSJ9.317e-1834.30Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC34110A02EF PostHarvP1 Citrus clementina cDNA clone C34110A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930875 ID=FC930875; Name=FC930875; organism=Citrus clementina; type=EST; length=700bp
GACCGCTACGCAATATAAAACGGCGTACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCG
ATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAG
CCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGCTTA
TTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACG
GATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTCA
TGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGG
GTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATT
ACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAGT
TGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCGG
CATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTGAG
ATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTGGA
TCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTTGCATCGGTTTCA
TTGTTGGTGCCAACATTTTGGCTGGTGGGCGCTTTGATGGTGCATCAATG
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