FC930875

Overview
NameFC930875
Unique NameFC930875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 57/183 (31.15%), Postives = 93/183 (50.82%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF-----STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            KA  AEF + LIFVF G GS + +        S    ++  S+A   A+         +SGGH+NPA+T    +G  I+LLR++ Y  AQL+G++    +L +     + G L  +  AL++  +   A+V E+++TF L   ++++    +   +G+ A + IG  V    L G  F G SM
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVN--ALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSM 184          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  164 LKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVV-ACLLLKFSTGGL--ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            LKA  AEF + LIFVF G  S + +        S    ++  +LA   A+         +SGGH+NPA+T    VG  I+LLR++ Y +AQL+G++  A +L   + G      +  +L++  +   AVV E+++TF L   ++++    +   +G+ A + IG  V    L G  F G SM
Sbjct:   11 LKAVFAEFLATLIFVFFGLASALKWP-------SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSM 184          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 60/185 (32.43%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            KA  AEF +MLIFV    GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA + IGF V    L    + GASM
Sbjct:   39 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASM 215          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            KA  AEF +MLIFV    GS + +     GGA  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +S+ + ++ E+++TF LV+T++A+    +    G+IA + IG  V    L    + GASM
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINW-----GGAEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVT--TVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASM 212          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 67/211 (31.75%), Postives = 106/211 (50.24%), Query Frame = 2
Query:   92 KFSIKMPIYRIAIGT---------------PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            KFS + PI   A G+               PGE       +A +AEF +  +F++    + M  +  T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G  ET+   A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   14 KFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 221          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 59/185 (31.89%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            KA  AEF +MLIFV    GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G++A + IGF V    L    + GASM
Sbjct:   36 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASM 212          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 63/181 (34.81%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  137 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            PGE       +A +AEF +  +F++    + M  SK T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R+I Y I Q LG++    ++K F  G   G    A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   48 PGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 225          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 64/193 (33.16%), Postives = 93/193 (48.19%), Query Frame = 2
Query:  140 GEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFAL-SSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            G + +   ++  + E     +F+F G  S +  S  T        GL+  +LAH  AL + ++   NISGGH NPAV+    + G +  +  I YW++QL G ++   L K  +          +AFA+         A+  EIVMT  LV  V   AV+ K   +G +AP  IGF V  +ILAGG   GA M
Sbjct:   29 GMSWYEQYIQPCVVELLGSALFIFIGCLSVIENSPNT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGVEIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACM 211          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 60/185 (32.43%), Postives = 96/185 (51.89%), Query Frame = 2
Query:  167 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            KA  AEF +MLIFV    GS + +     GG   P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA + IGF V    L    + GASM
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINW-----GGKENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASM 212          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 62/181 (34.25%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  137 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPICIGFIV 655
            PGE       +A +AEF +  +F++    + M  SK +   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R+I Y + Q LG++    ++K F  G   G    A  ++SG +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   45 PGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
The following BLAST results are available for this feature:
BLAST of FC930875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
AQP5_RAT1.757e-1631.15Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP5_PIG1.757e-1631.87Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP4_NOTAL1.757e-1632.43Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_BOVIN1.757e-1632.97Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
PIP12_ORYSJ2.295e-1631.75Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
AQP4_RAT2.295e-1631.89Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
PIP13_MAIZE2.997e-1634.81Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
AQP8_RAT2.997e-1633.16Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
AQP4_DIPME2.997e-1632.43Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
PIP11_ORYSJ3.914e-1634.25Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC34110A02EF PostHarvP1 Citrus clementina cDNA clone C34110A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930875 ID=FC930875; Name=FC930875; organism=Citrus clementina; type=EST; length=700bp
GACCGCTACGCAATATAAAACGGCGTACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCG
ATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAG
CCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGCTTA
TTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACG
GATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTCA
TGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGG
GTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATT
ACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAGT
TGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCGG
CATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTGAG
ATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTGGA
TCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTTGCATCGGTTTCA
TTGTTGGTGCCAACATTTTGGCTGGTGGGCGCTTTGATGGTGCATCAATG
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