FC930878

Overview
NameFC930878
Unique NameFC930878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930878_ssr616 microsatellite FC930878_ssr616:616..627. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:51..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_CHAGB (Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum GN=TIF35 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRV---RKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGA--VLMVCRTCGKKGDHWTSRCPFKDLAAP 573
            PP Q I  +++G   +IEY+ ND G KVK     R    R++ N R++    ER+ WAKFGD+  +  G      +  E ++ RP     K E    A D  AQ  K       + CR C   G+H+T+RCP+KD  AP
Sbjct:   29 PPPQKI-QNKDGTWTIIEYRINDLGQKVKATRRVRYVVRREVVNPRVA----ERKTWAKFGDSANDPKGPAPDTTTVGENIIFRPSVNWRK-EAKDEANDPNAQAMKDKLKDKKVKCRIC--NGEHFTARCPYKDTMAP 159          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3GB_XENLA (Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus laevis GN=eif3g-B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P++VI      +K + EYK ND   K+KI    R  K+   + SK    R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +
Sbjct:   43 PREVIN---GNIKTITEYKLNDKDKKIKIV---RTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQ 166          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_MAGGR (Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe grisea GN=TIF35 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRV---RKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAA-GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP 573
            P+ ++  D  G K +I ++FND G KVK     R+   R++ N R++    ER+ W KFG + ++  G      S  E ++ RP A   K ++ ++   ++ A   K     + CR C   G+H+T+RCP+KD  AP
Sbjct:   28 PQTIVNKD--GTKTIISWRFNDQGQKVKTTRRVRLTTHREVVNPRVA----ERKKWEKFGLSAKDGPGPASDTTSVGENIIFRPSANWRKDQKDESKDANANAMKDKLKDKKVKCRICN--GEHFTARCPYKDTMAP 156          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROWI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila willistoni GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFID 591
            P K+ I   E   K V EYK+N+DG K+K+    +++K     +SK   +RRNW KFG++  +  G  S+ TM + E  +L      GSK  E +   +     GK    +  CR C   G+HW+  CP+K  A  ++T ++
Sbjct:   22 PAKEYI---EGEYKYVTEYKYNEDGKKIKVVRTFKIKKQV---VSKAVAKRRNWVKFGESSSDKPGPNSQTTMAAEEIFML----FMGSK--EFEQTNELQIDPGKN---IAKCRIC--NGEHWSVNCPYKGTAMDSKTMME 146          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROSI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila simulans GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  211 KKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFID 591
            K V EYKFNDDG KVK+    R  K+    + K    RRNW KFGD+  +  G +  T +++EEIL++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++
Sbjct:   32 KYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEILMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTMME 146          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROPE (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila persimilis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  199 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFID 591
            +  +K V EYK+N+DG KVK+    R  K+    + K    RRNW+KFGD++ +  G  S+ TMV+ E  ++       SK  E   A +   + GK    +  CR C   G+HW+  CP+K  +  ++T ++
Sbjct:   28 QGNLKFVAEYKYNEDGKKVKV---VRTYKIQKQTVPKVVARRRNWSKFGDSLLDKPGPCSQTTMVAEEVHMV----FISSKELEQAQAQEPQVEPGKN---IARCRIC--NGEHWSVNCPYKGTSMDSKTLME 148          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_SCLS1 (Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP 573
            P+     +++G + ++ ++FNDDG KVK     R  K+    ++ R  ER++W KFG + ++  G      S  E ++ RP     K +  +   D+ A   K     + CR C   G+H+T++CPFK   AP
Sbjct:   23 PQSTTTTNKDGTQTIVTWRFNDDGKKVKTTRRIRFTKVKEI-VNPRVAERKSWGKFGLSQKDAAGPASDTTSVGENIIFRPSTNWRK-DAKEEVSDAGAMKNKLKDKQVKCRIC--SGEHFTAKCPFKGTMAP 151          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_BOTFB (Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP 573
            P+     +++G + ++ ++FNDDG KVK     R  K+    ++ R  ER++W KFG + ++  G      S  E ++ RP     K +  +   D+ A   K     + CR C   G+H+T++CPFK   AP
Sbjct:   23 PQSTTTTNKDGTQTIVTWRFNDDGKKVKTTRRIRFTKVKEI-VNPRVAERKSWGKFGLSQKDAAGPASDTTSVGENIIFRPSTNWRK-DAKEEVSDAGAMKNKLKDKQVKCRIC--SGEHFTAKCPFKGTMAP 151          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROSE (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila sechellia GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  211 KKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFID 591
            K V EYKFNDDG KVK+    R  K+    + K    RRNW KFGD+  +  G +  T +++EEIL++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++
Sbjct:   32 KYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEILMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTVME 146          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G1_DROVI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila virilis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  199 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLA 567
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFGD+  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKV---VRTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPSKN---IAKCRIC--NGEHWSVNCPYKGTA 140          
The following BLAST results are available for this feature:
BLAST of FC930878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EIF3G_CHAGB8.980e-1235.97Eukaryotic translation initiation factor 3 subunit... [more]
EI3GB_XENLA8.980e-1232.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MAGGR1.173e-1132.12Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROWI1.173e-1133.10Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROSI1.173e-1135.94Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROPE1.173e-1133.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCLS11.532e-1130.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOTFB1.532e-1130.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROSE1.532e-1135.94Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROVI2.000e-1136.80Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110A05EF PostHarvP1 Citrus clementina cDNA clone C34110A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930878 ID=FC930878; Name=FC930878; organism=Citrus clementina; type=EST; length=664bp
GNGAATCGCAAACCCTAAAACGCTTTGTCTCGCATCCTCTCCAACGCTTG
TGTTTTTCTTAATCTGATTCATTCGAAAAAGATGTCGGTTTCGACTCAAA
ATCCGACCCAACCAAAGCTCCGTTGGAGCGAACTGGACGAAGAAGACGGC
GAGGATTTGGACTTCCTGCTGCCGCCTAAACAAGTGATCGGCCCCGACGA
GAACGGAGTCAAGAAAGTTATTGAATACAAGTTTAACGATGACGGCAATA
AGGTCAAAATAACCACCACCACGCGCGTGCGCAAGCTCGCTAACGCTCGT
CTCAGCAAACGCGCGCTGGAGAGGAGAAACTGGGCCAAGTTCGGCGACGC
CGTTCGCGAAGACGTCGGTAGCAGACTTACCATGGTCTCCACCGAAGAGA
TCTTGCTGGAACGGCCTAGGGCTCCTGGTAGCAAACCAGAAGAGACAAAG
GCTGCAGGAGATTCCTTGGCGCAACTTGGGAAAGGTGGTGCTGTTCTCAT
GGTGTGTAGGACTTGTGGTAAGAAGGGTGATCACTGGACGTCAAGGTGCC
CTTTCAAGGATCTTGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCT
GCATCAGAGACTGCAGCTGCTGCTGCTGGCGTGACCAAGGGACATATGTT
CCTCCTGGCATGAG
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