FC930878

Overview
NameFC930878
Unique NameFC930878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930878_ssr616 microsatellite FC930878_ssr616:616..627. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:51..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROYA (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila yakuba GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  199 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFID 591
            E   K V EYKFNDDG KVK+    R  K+    + K    RR+W KFGD+  +  G +  T +++EEI ++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++
Sbjct:   28 EGDYKYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRSWVKFGDSRLDKPGPNSQTTMASEEIFMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTMME 146          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROVI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila virilis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAET 582
            P K+ +  D    K V EYKFND+G K+K+    ++ K     +S+   +RRNW KFGD+  +  G +  T    +EIL+      GSK  + + A D L      G  +  CR C   G+HW+ +CP+K  +   E+
Sbjct:   22 PSKEYVDGD---YKHVTEYKFNDEGKKIKVVRSFKIEKKI---VSRAVAKRRNWVKFGDSKLDKPGPNSYTTKVADEILM---NYMGSK--DFEHAQDPL----DAGKPMAKCRIC--NGEHWSVKCPYKGTSMDMES 142          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  202 NGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            +G K +IE++ +D+G KVK+    R + +   R+     ER+ W KFG    ++ G  +R T V     L  +     +K EE   A  + A++   G+ ++ CR C  KG+H+T++CP+K +  P +
Sbjct:   29 DGTKTMIEFRIDDNGKKVKVTRVIR-KTVITERVQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAKGSSVVRCRAC--KGNHFTAQCPYKSIIGPVD 153          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_NEMVE (Eukaryotic translation initiation factor 3 subunit G OS=Nematostella vectensis GN=v1g171563 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKD 561
            PP   +   EN  K V EYK +D+G   KI    RV      R++K   +R+ W KFGD+  +  G   T  +  + +     +    P+ T+   D L +L   G  ++ CR C  KGDHWT++CP+KD
Sbjct:   31 PPSSEVREGEN--KIVTEYKRDDEGKLQKIITTYRVE---TRRVAKEIAKRKLWKKFGDSKNDKPGPNKTTTNVCDDVFLILTSNKENPDATEE--DPLKKLS--GQKIVQCRIC--KGDHWTTKCPYKD 149          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G2_DROME (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila melanogaster GN=eIF3-S4-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  211 KKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFID 591
            K V EYKFNDDG KVK+    R  K+    + K    RRNW KFGD+  +  G +  T +++EEI ++     GSK  +     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++
Sbjct:   32 KYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQ---FIGSK--DFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTVME 146          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G1_DROYA (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila yakuba GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  199 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLA 567
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKV---VRTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRIC--NGEHWSVNCPYKGTA 140          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G1_DROER (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila erecta GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  199 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLA 567
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKV---VRTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRIC--NGEHWSVNCPYKGTA 140          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EI3G1_DROAN (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila ananassae GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  199 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLA 567
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKV---VRTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRIC--NGEHWSVNCPYKGTA 140          
The following BLAST results are available for this feature:
BLAST of FC930878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EI3G2_DROYA7.602e-1134.09Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROVI7.602e-1133.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCHPO9.928e-1130.47Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEMVE9.928e-1133.85Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROME9.928e-1134.38Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROYA9.928e-1136.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROER9.928e-1136.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROAN9.928e-1136.00Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110A05EF PostHarvP1 Citrus clementina cDNA clone C34110A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930878 ID=FC930878; Name=FC930878; organism=Citrus clementina; type=EST; length=664bp
GNGAATCGCAAACCCTAAAACGCTTTGTCTCGCATCCTCTCCAACGCTTG
TGTTTTTCTTAATCTGATTCATTCGAAAAAGATGTCGGTTTCGACTCAAA
ATCCGACCCAACCAAAGCTCCGTTGGAGCGAACTGGACGAAGAAGACGGC
GAGGATTTGGACTTCCTGCTGCCGCCTAAACAAGTGATCGGCCCCGACGA
GAACGGAGTCAAGAAAGTTATTGAATACAAGTTTAACGATGACGGCAATA
AGGTCAAAATAACCACCACCACGCGCGTGCGCAAGCTCGCTAACGCTCGT
CTCAGCAAACGCGCGCTGGAGAGGAGAAACTGGGCCAAGTTCGGCGACGC
CGTTCGCGAAGACGTCGGTAGCAGACTTACCATGGTCTCCACCGAAGAGA
TCTTGCTGGAACGGCCTAGGGCTCCTGGTAGCAAACCAGAAGAGACAAAG
GCTGCAGGAGATTCCTTGGCGCAACTTGGGAAAGGTGGTGCTGTTCTCAT
GGTGTGTAGGACTTGTGGTAAGAAGGGTGATCACTGGACGTCAAGGTGCC
CTTTCAAGGATCTTGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCT
GCATCAGAGACTGCAGCTGCTGCTGCTGGCGTGACCAAGGGACATATGTT
CCTCCTGGCATGAG
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