FC930879

Overview
NameFC930879
Unique NameFC930879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT8B4_HUMAN (Probable phospholipid-transporting ATPase IM OS=Homo sapiens GN=ATP8B4 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 36/125 (28.80%), Postives = 64/125 (51.20%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNST-------IDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDS---IPVFPN 345
            D+D+S +  +  P+LY  G     +N + F++ +   ++ SLVLF+IP  A+ N          D  S       ++VI+V++ +A+D   W F+ H  +WGSI   ++ +  + S     +FPN
Sbjct:  926 DQDVSDQNSVDCPQLYKPGQLNLLFNKRKFFICVLHGIYTSLVLFFIPYGAFYNVAGEDGQHIADYQSFAVTMATSLVIVVSVQIALDTSYWTFINHVFIWGSIAIYFSILFTMHSNGIFGIFPN 1050          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT8B1_MOUSE (Probable phospholipid-transporting ATPase IC OS=Mus musculus GN=Atp8b1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 45/171 (26.32%), Postives = 75/171 (43.86%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNST-------IDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPV---FPNYW----TIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSD 471
            D+D+S K  +++P LY  G R   +N + F++++   +  S+VLF+IPL AY  +         D  S       A+VI VN  + +D   W FV   +++GSI   +  M    S  +   FP+ +    T  +  + P  W            P    + +    WPS+
Sbjct: 1004 DQDVSDKLSLRFPGLYVVGQRDLLFNYKRFFVSLLHGVLTSMVLFFIPLGAYLQTVGQDGEAPSDYQSFAVTVASALVITVNFQIGLDTSYWTFVNAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVCLLPVVAIRFLSMTIWPSE 1174          
The following BLAST results are available for this feature:
BLAST of FC930879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AT8B4_HUMAN5.136e-1128.80Probable phospholipid-transporting ATPase IM OS=Ho... [more]
AT8B1_MOUSE8.761e-1126.32Probable phospholipid-transporting ATPase IC OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionC34110A06EF PostHarvP1 Citrus clementina cDNA clone C34110A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930879 ID=FC930879; Name=FC930879; organism=Citrus clementina; type=EST; length=718bp
GACAAGGACTTAAGCCATAAGACACTAATGCAGTATCCAAAACTTTATGG
TGCGGGGCATAGACAAGAAGCATACAATATGCAGCTCTTCTGGCTCACAA
TGTGTGACACACTGTGGCAGAGTCTTGTTCTCTTCTATATACCTTTATAT
GCCTACCAGAACAGCACAATTGATATTTGGAGCATGGGCAGTGTATGGAC
AATAGCAGTGGTCATCCTTGTTAACATACTCCTGGCAATGGACATTCAGC
GTTGGGTATTCGTTACTCATGCTGCGGTATGGGGCTCGATAATTACTACG
TATGCCTGCATGGTGGTGTTGGATTCTATTCCTGTATTTCCCAATTACTG
GACAATCTACCATCTGGCTAAGTCACCTACCTACTGGCTCATCATTTTTC
TTATTTTAATTGTTGCATTGCTCCCTCGTTTTCTTTTCAAAGTTGTACAG
CAATATTTTTGGCCATCAGATATCCAGATAGCCAGAGAAGCTGAGGTACT
AAGGAAAGGGTCCAATTATTTGGCGCCACAAGCAGATCAAGTTTCCAGAT
AGATTATGCTTACATGTTGTTCTTGATCCATTCTTAAGATGGCTTCCCAT
GTGTTTATCCATCATACGGCATTCTTACAGCATGTAGCTCTGAACTTTTA
TGGTGAGTTACACAGTTGATTTTGCACCAGTGTGCATTTGGTCAGAGAGG
CGAGCAAGCCAGAGAGTG
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