FC930881

Overview
NameFC930881
Unique NameFC930881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:200..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: EF2_METTE (Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 76/200 (38.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   19 EIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 618
            EI  S P+V +RET+ +K    V  KSPN+HNR Y+   PL+  + E I  G I   + P++  +    E G  K+ AK I          N+ +D+ KG+QYLNE  + ++ GF+   + G L  E +  +   + D  LH DAIHRG  QVIP AR+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG
Sbjct:  456 EITTSKPIVVYRETI-KKKIEPVEGKSPNRHNRFYIYVEPLDTAIVEMIKSGDIS-MNLPELERRQKLIELGMGKEEAKGIVGIH----NSNIFIDITKGIQYLNETMELILDGFEEVMRAGPLTREPVANMKCVLVDAKLHEDAIHRGPAQVIPAARQAIQAGMLMAEDCLLEPYQKVFVQVPQLTMGGATKELQGRRG 649          
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 76/227 (33.48%), Postives = 119/227 (52.42%), Query Frame = 1
Query:   13 GAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYTSGIPPVVESL 693
            G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  +   GI PV E +
Sbjct:  454 GIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEGDLMVVEGIAPVDEMI 673          
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 76/227 (33.48%), Postives = 119/227 (52.42%), Query Frame = 1
Query:   13 GAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYTSGIPPVVESL 693
            G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  +   GI PV E +
Sbjct:  454 GIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEGDLMVVEGIAPVDEMI 673          
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 77/228 (33.77%), Postives = 118/228 (51.75%), Query Frame = 1
Query:   13 GAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYTSGIPPVVE 687
            G E+   +P+V +RE V   S   V  KSPNKHNRLY  A PL+E +  A  +G I   D  K   K +     E G +++ AK++          N++++M +G+  L+E ++ ++ GF+ A K G LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+ +RG +  +M++ G         PV E
Sbjct:  457 GVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQIL-DMEQEGDMTTIKSKAPVSE 678          
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 69/245 (28.16%), Postives = 123/245 (50.20%), Query Frame = 1
Query:   19 EIIKSDPVVSFRETVLEKSCRTV-MSKSPNKHNR-------LYMEARPLEEGLAEAIDDGRIGP----------RDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADA-IHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG-HVFEEMQRPGTPLY-TSGIPPVVES 690
            EI  SDP+  F E+   +S  ++ +S S ++          + + A P++  + + +    +G            D+P+  SKIL  E+GWD   ++ +W F    +  N  +      + L++ K+ ++ GF WA KEG LAEE + G+ +++  + + +D  I     Q+IP  ++  Y   LTA P LLEP+Y V+I      L  +  ++ ++RG  +++ ++  GTPL    G  PV+ES
Sbjct:  667 EIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMIQDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSFYNGNVLINDTLPDEISPELLSKYKEQIIQGFYWAVKEGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIKVAGTPLLEVRGQVPVIES 911          
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 65/225 (28.89%), Postives = 108/225 (48.00%), Query Frame = 1
Query:   19 EIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGL----AEAIDDGRIGPRDDPKVRSKILSE--EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYTSGIP 675
            +II S+P+V +RE+V +     V  KSPNK N+ Y+    + + L     E +  G +      K+   I+      G+ ++ A++      E    NM  DM +G+ ++ E+ D V+  F      G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  + +P
Sbjct:  468 DIITSNPIVVYRESV-KGQAGPVEGKSPNKLNKFYITVEKMPDELYWKLREKLLKGELPEGKIKKMNEDIIKHLMSLGFTREEAQRCKVIYRE----NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRALIKAKVP 687          
BLAST of FC930881 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 70/246 (28.46%), Postives = 113/246 (45.93%), Query Frame = 1
Query:   31 SDPVVSFRETVLEKSCRTVMSKSPN--KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEE---FGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYL-----------NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLY-TSGIPPVVES 690
            S  VV F    L K  +T+ + S N  K NR  + +  L + + E +   +   R      SK+L EE    G  K+    I  FGP+ +GPN++ D  K ++             +++ + VV  FQ  + +G L  E ++GIC  +    +  D+              GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++++RG V +E  + GTP +    + PVVES
Sbjct:  679 SGSVVDF----LLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTPEKFYER-----LSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVES 915          
The following BLAST results are available for this feature:
BLAST of FC930881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
EF2_METTE1.984e-2838.00Elongation factor 2 OS=Methanosarcina thermophila ... [more]
EF2_HALSA1.984e-2833.48Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS31.984e-2833.48Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_META31.857e-2633.77Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
SN114_YEAST3.393e-2028.16114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_NANEQ4.431e-2028.89Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
RIA1_SCHPO1.475e-1528.46Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC34110A08EF PostHarvP1 Citrus clementina cDNA clone C34110A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930881 ID=FC930881; Name=FC930881; organism=Citrus clementina; type=EST; length=698bp
GATTTCATGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGTCCTT
CCGTGAGACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAGTCTC
CAAACAAACACAATCGTCTCTATATGGAAGCCCGGCCATTGGAGGAAGGT
CTTGCTGAGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATCCTAA
GGTTCGTTCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTG
CCAAGAAAATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTT
GTGGATATGTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGT
TGTTGCTGGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAA
ACATGAGGGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGAT
GCTATCCACAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCAT
TTATGCATCCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACT
TGGTGGAAATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTT
CTTAACCAGAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTAC
CCCACTTTATACATCAGGCATACCTCCGGTCGTTGAGTCTTTGGATTT
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