FC930888

Overview
NameFC930888
Unique NameFC930888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:23..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 249
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 249
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 249
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 249
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 249
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 294
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    8 ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 294
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    8 ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of FC930888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN1.565e-1255.22Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA1.565e-1255.22Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB1.565e-1255.22Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE1.565e-1255.22Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK1.565e-1255.22Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN5.947e-1246.34Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE2.260e-1145.12Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC34110B04EF PostHarvP1 Citrus clementina cDNA clone C34110B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930888 ID=FC930888; Name=FC930888; organism=Citrus clementina; type=EST; length=707bp
GGAGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTT
GAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAA
GAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCT
GAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTG
CAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACT
ATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGT
AGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAG
ATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAG
AGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGA
TCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAA
GGAACAGTTGCTGAGCGAAGCANATAAGACCCTCAAACAAAGGTTGATGG
AGGGATACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGT
GGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTTCTTTCACGC
CTTGGAATGTGAAACCCACATTGCAATTGGATACCAGCCTGCGNACCCCA
TATCGGT
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