FC930888

Overview
NameFC930888
Unique NameFC930888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:23..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 69/151 (45.70%), Postives = 100/151 (66.23%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 501
            +KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY+F +SSSM   +ERY +     P   ++A    +L  QQE   L+ +   LQ   R LLG++L  L+ ++L++LE +L+MSLK IR  +   M+D + EL  K
Sbjct:    8 IKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKL-WQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 69/175 (39.43%), Postives = 109/175 (62.29%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLMEGYQVN 567
            +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SSSSM   +ERYQ+    A E +      +  +   Q+E   L+ + + L  + R LLGEE+     ++L+ L+ Q++MSL  IR+ + Q + + + +L  K  L+ +    L+++    +Q N
Sbjct:    8 IKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQE----AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRN 177          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 74/168 (44.05%), Postives = 104/168 (61.90%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLME 552
            +KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF SS+SM KTL RY      +  P ++ +   +    +  L LK     LQ    ++ G+ L  L+ KEL+ LE+QL+ SL  +R  +   +   L E + KEQ      +TL++++ E
Sbjct:    8 IKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDL-LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 173          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 75/184 (40.76%), Postives = 112/184 (60.87%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQ------HKEQL-LSEAXKTLKQRLMEGYQVNTLQ 576
            ++RI+N  +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FS+ G+LYEF SS++M   ++RY      A E  +      E+   Q+E   L+ +   LQ S + L+GEEL  L  ++L+ LE +L++SL+ IR  +   +   + EL       H+E + LS +   + Q+ +E Y  N LQ
Sbjct:    8 IRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYT----NAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMSQQKLELY--NKLQ 184          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 73/174 (41.95%), Postives = 107/174 (61.49%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLMEGYQVN 567
            +++I++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSN  KLY+F +SSS+  T+ER+   N    E       A E+   Q+E   L+    +LQ + R L G EL  L+ KEL+++E QL+MSL+ IR  R Q + + + EL  K  L+      L +++   +Q N
Sbjct:    8 IQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDF-ASSSVKSTIERF---NTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQEN 177          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 69/173 (39.88%), Postives = 104/173 (60.12%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKC-NYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLMEGYQ 561
            +KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS +  L+ L E+YQ   N    E N   +  LE++      ++K   E L+   R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KEQ+L +    L + + E  Q
Sbjct:    8 IKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEINHDQQILLEMT------RMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQ 174          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 73/168 (43.45%), Postives = 105/168 (62.50%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLME 552
            +KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ SS+ M +TL RY   N+ +   + +  +  E+        LK +   LQ     L G+ L PL  KEL+SLE+QL  +L  +R  + + + + L E + KEQ      +TL++++ E
Sbjct:    8 IKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYG--NHQSSSASKAEEDCAEVDI------LKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQE 166          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 67/185 (36.22%), Postives = 107/185 (57.84%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLMEGYQVNT---LQLNPSAE 594
            +KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GKLY F S  +++K L+RY K +         A +   L  Q + L   + YE L+     L+G  +  ++   L  LE  L+ +L   R+ +T+ ML  +  L+ KE++L E  + L  ++   + V     ++++P+ +
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQH---------ADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEMSPAGQ 183          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.234e-25
Identity = 67/165 (40.61%), Postives = 103/165 (62.42%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQR 543
            +++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+EFC SSSM + LER+   +    + +  + E L+L    ++ ++           R + GEEL  L+ +EL+ LE+ L+  L ++  T++  ++  ++ELQ K   L +  K L+Q+
Sbjct:    8 IRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC-SSSMKEVLERHNLQSKNLEKLDQPSLE-LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170          
BLAST of FC930888 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.234e-25
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 1
Query:   49 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAXKTLKQRLME 552
            L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++ +M + +ERY+     A     +A     +  +QE + LK     LQ+  R + G      +  +EL +LER L++ +  IRS + Q M+  +  L+ KE +L  A + L+++++E
Sbjct:    8 LRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172          
The following BLAST results are available for this feature:
BLAST of FC930888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD23_ORYSJ1.722e-2745.70MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD25_ORYSJ2.249e-2739.43MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AGL15_BRANA2.938e-2744.05Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD57_ORYSJ3.837e-2740.76MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL17_ARATH5.011e-2741.95Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
M17_MAIZE4.242e-2639.88MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL15_ARATH4.242e-2643.45Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
FLC_ARATH5.540e-2636.22MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
SVP_ARATH1.234e-2540.61MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD26_ORYSJ1.234e-2538.46MADS-box transcription factor 26 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34110B04EF PostHarvP1 Citrus clementina cDNA clone C34110B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930888 ID=FC930888; Name=FC930888; organism=Citrus clementina; type=EST; length=707bp
GGAGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTT
GAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAA
GAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCT
GAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTG
CAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACT
ATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGT
AGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAG
ATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAG
AGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGA
TCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAA
GGAACAGTTGCTGAGCGAAGCANATAAGACCCTCAAACAAAGGTTGATGG
AGGGATACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGT
GGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTTCTTTCACGC
CTTGGAATGTGAAACCCACATTGCAATTGGATACCAGCCTGCGNACCCCA
TATCGGT
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