FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.532e-32
Identity = 61/118 (51.69%), Postives = 96/118 (81.36%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +G+  KITITN+KGRLS++EI++MV+EAE++  ED++ K+K++A+NALE Y YNM+N V D +K+  KL+  +K+KIE A  +A++WLD NQ +E +E+++K+KE+E++CNPII  +Y
Sbjct:  526 SGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVY 643          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.001e-32
Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ NKITITNDKGRLSK++I+KMV EAEK+KAEDE+  ++V+AKN LE+YA+ ++N+V +     K+   D +K+E A   AI WLD++Q A  +E++++ KELE + NPI++K Y
Sbjct:  493 TGKSNKITITNDKGRLSKEDIDKMVAEAEKFKAEDEQEAQRVQAKNQLESYAFTLKNSVSENNFKEKVGEEDARKLEAAAQDAINWLDASQAASTEEYKERQKELEGVANPIMSKFY 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 136.732 bits (343), Expect = 3.414e-32
Identity = 63/117 (53.85%), Postives = 89/117 (76.07%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ NKITITNDKGRLSK++IEKMV EAEK+K EDE+  +++ +KN LE+ AY+++NT+ +   G KL+ ADK  +    ++ I WLDSN  A  +EF+DK+KEL+ I NPI++K+Y
Sbjct:  492 TGKSNKITITNDKGRLSKEDIEKMVAEAEKFKEEDEKESQRIASKNQLESIAYSLKNTISE--AGDKLEQADKDTVTKKAEETISWLDSNTTASKEEFDDKLKELQDIANPIMSKLY 606          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.823e-32
Identity = 63/118 (53.39%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RLS ++IE+M+ +AEK+  +D++ K K EA+N LE+YAYN++N ++D EK+G KLD  DKK IE+A+++AI WL SN  A A+E +++ K+LES   PI++K+Y
Sbjct:  523 TGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVKDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLY 640          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_THEAN (Heat shock 70 kDa protein OS=Theileria annulata GN=TA11610 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.823e-32
Identity = 57/118 (48.31%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   +TITNDKGRLS++EI++MV+EAEKYK EDE+ ++ VE+++ LENY Y+M+NT+ ++++  KL   +       I  A++W+++NQLAE DE+EDK+K +E +CNP++ K+Y
Sbjct:  495 STGKSEHVTITNDKGRLSQEEIDRMVEEAEKYKEEDEKRRRCVESRHKLENYCYSMKNTLSEDQVKQKLGADEVDSALSTITDALKWVEANQLAEHDEYEDKLKHVEGVCNPLVTKLY 612          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.605e-32
Identity = 58/118 (49.15%), Postives = 90/118 (76.27%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            ++G+ NKITITND  RLSKD+I++M+ +AE++KAED+  ++++ AKN LE YA+N+++ V D    SKL P DK+ +  A++  +QWLDSN LA+ +EF  K++EL+  C+PI+AKM+
Sbjct:  494 SSGRSNKITITNDSDRLSKDDIDRMINDAERFKAEDDAQRERINAKNQLEGYAFNLKSAVDDAAAQSKLSPGDKETVTKAVNDVLQWLDSNSLADKEEFTYKLEELQKTCSPIMAKMH 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.605e-32
Identity = 62/118 (52.54%), Postives = 90/118 (76.27%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TT +  KITITNDKGRLS  +I KMV++AEK+K +D++ K+++E+KN LENY ++++N++ D+KI SKL  +DK  IE   +  ++WL+SNQ AE DEF  K+ +LESI NPI++K Y
Sbjct:  495 TTKKVEKITITNDKGRLSLKDITKMVEDAEKFKEQDQQQKERIESKNNLENYIFSVKNSINDQKIISKLSKSDKNIIESETESTLKWLESNQSAEKDEFNQKISDLESIVNPILSKFY 612          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_SCHJA (Heat shock 70 kDa protein (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.297e-31
Identity = 60/117 (51.28%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKK-KIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKM 352
            TG++NKITITNDKGRLSK+EI++M+ EA++YK+EDE+ K ++ AKN+LE+Y Y+M+ +V+ +++  K+  +D+K +I    ++ I+W+D+NQLAE +EFE+K  ELE +C PII  M
Sbjct:   50 TGKENKITITNDKGRLSKEEIDRMINEADRYKSEDEKQKNRICAKNSLESYVYSMKQSVEGDEMKDKISESDRKNRILSKCEETIRWMDNNQLAEKEEFEEKKSELEKVCMPIITAM 166          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.694e-31
Identity = 63/118 (53.39%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RLS ++IE+M+ +AEK+  +D++ K+K EA+N LE+YAY+++N + D EK+G KLD  DKK IE+A+D+AI WL SN  A A+E +++ KELE    PI++K+Y
Sbjct:  523 TGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVKEKAEARNELESYAYSLKNQIGDKEKLGGKLDEDDKKTIEEAVDEAISWLGSNADASAEELKEQKKELEGKVQPIVSKLY 640          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_YEAST (Heat shock protein SSA2 OS=Saccharomyces cerevisiae GN=SSA2 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 2.213e-31
Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ NKITITNDKGRLSK++IEKMV EAEK+K EDE+  +++ +KN LE+ AY+++NT+ +   G KL+ ADK  +    ++ I WLDSN  A  +EF+D++KEL+ + NPI++K+Y
Sbjct:  492 TGKSNKITITNDKGRLSKEDIEKMVAEAEKFKEEDEKESQRIASKNQLESIAYSLKNTISE--AGDKLEQADKDAVTKKAEETIAWLDSNTTATKEEFDDQLKELQEVANPIMSKLY 606          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
BIP1_ARATH1.532e-3251.69Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
HSP74_YEAST2.001e-3252.14Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP71_YEAST3.414e-3253.85Heat shock protein SSA1 OS=Saccharomyces cerevisia... [more]
HSP7C_CAEEL5.823e-3253.39Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP70_THEAN5.823e-3248.31Heat shock 70 kDa protein OS=Theileria annulata GN... [more]
HSP74_PARLI7.605e-3249.15Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
HS7C3_DICDI7.605e-3252.54Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP70_SCHJA1.297e-3151.28Heat shock 70 kDa protein (Fragment) OS=Schistosom... [more]
HSP7C_CAEBR1.694e-3153.39Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
HSP72_YEAST2.213e-3152.14Heat shock protein SSA2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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