FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.890e-31
Identity = 56/118 (47.46%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+E+E+MV+EAE+YKAEDE  + +V AKN+LE + ++++ ++++E +  K+   D+ K++D   + + WL+ NQLA+ +E+E + +ELE IC PI +++Y
Sbjct:  496 STGKANKITITNDKGRLSKEEVERMVREAEQYKAEDEAQRDRVAAKNSLETHVFHVKGSLQEESLRDKIPKEDRHKVQDKCQEVLAWLEHNQLADKEEYEHQKRELEQICRPIFSRLY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.774e-31
Identity = 57/118 (48.31%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+E+E+MV EAE+YKAEDE  + +V AKN+LE + ++++ ++++E +  K+   D++K++D   + + WL+ NQLAE +E+E + +ELE IC PI +++Y
Sbjct:  496 STGKANKITITNDKGRLSKEEVERMVHEAEQYKAEDEAQRDRVAAKNSLEAHVFHVKGSLQEESLRDKIPEEDRRKMQDKCREVLAWLEHNQLAEKEEYEHQKRELEQICRPIFSRLY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_PICAN (Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.929e-31
Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLSK+EI++MV EAEKYK EDE+   ++ AKN LE+YAY+++ T  +++   K+D + ++ +  AI++ I WLD+NQ A  DE+EDK KELE I N  +  +Y
Sbjct:  495 TGKSQKITITNDKGRLSKEEIDRMVAEAEKYKEEDEKEAARIAAKNGLESYAYSLKQTASEKQFEEKVDASKRESLNKAIEETISWLDNNQSATTDEYEDKRKELEGIANDALKDLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.438e-31
Identity = 60/118 (50.85%), Postives = 93/118 (78.81%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL P DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  518 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSPEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.438e-31
Identity = 62/118 (52.54%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KN+I I ND+ RLS ++IE+M+ +AEKY  ED++ K+KV+AKN LE+YAY+++N + D EK+G+KL   DK+KI +A+D+AI+WL+SN  AE++ F +K  ELE I  PI+ K+Y
Sbjct:  527 TGSKNQIVIQNDQNRLSPEDIERMINDAEKYADEDKKVKEKVDAKNELESYAYSLKNQIGDKEKLGAKLSDEDKEKITEAVDEAIKWLESNAEAESEAFNEKKTELEGIVQPIMTKLY 644          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.408e-31
Identity = 59/118 (50.00%), Postives = 93/118 (78.81%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++A+N LE+YAY+++N + D EK+G KL   DK+ IE A+++ I+WL+S+Q A+ ++F+ K KELE +  PI++K+Y
Sbjct:  516 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDARNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKSKKKELEEVVQPIVSKLY 633          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.098e-30
Identity = 56/118 (47.46%), Postives = 89/118 (75.42%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+E+E+MV+EA++YK EDE  + +V AKN+LE Y ++++ ++ +E +  K+   D+ K++D   + + WL+ NQLAE +E+E + +ELE IC PI +++Y
Sbjct:  496 STGRANKITITNDKGRLSKEEVERMVREADEYKVEDEAQRDRVAAKNSLEAYVFHVKGSLHEESLRDKIPEEDRCKVQDKCQEVLTWLEHNQLAEKEEYEHQKRELEQICRPIFSRLY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 60/118 (50.85%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNK+TITND  RLS ++IE+M+ +A+K+ A+D+  K+KVE++N LE YAY M+  + D EK+G KL   DK  IE A+++AI+WL SNQ A  +E +++ KELES+  PI++K+Y
Sbjct:  520 TGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 637          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 59/118 (50.00%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ IE A+++ I+WL+S+Q A+ ++F+ K KELE I  PI+ K+Y
Sbjct:  519 TGNKNKITITNDQNRLTPEEIERMVTDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIVGKLY 636          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 59/118 (50.00%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  518 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
HSP76_SAGOE2.890e-3147.46Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP76_HUMAN3.774e-3148.31Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP71_PICAN4.929e-3151.28Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 ... [more]
GRP78_RAT6.438e-3150.8578 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_APLCA6.438e-3152.5478 kDa glucose-regulated protein OS=Aplysia califo... [more]
GRP78_CHICK8.408e-3150.0078 kDa glucose-regulated protein OS=Gallus gallus ... [more]
HSP76_PIG1.098e-3047.46Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP7D_CAEEL5.450e-3050.85Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
GRP78_XENLA5.450e-3050.0078 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_PONAB5.450e-3050.0078 kDa glucose-regulated protein OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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