FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 59/118 (50.00%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  519 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 636          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 59/118 (50.00%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  518 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 59/118 (50.00%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  518 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 59/118 (50.00%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  519 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 636          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++NKITITNDKGRLSK+EIE+MV +A+KYKAEDE+ + +V AKN+LE+Y Y M+  V+ E +  K+  +D++ I    +  I WLD +Q AE  E+E K +ELE +C PII K+Y
Sbjct:  493 TGKQNKITITNDKGRLSKEEIERMVADADKYKAEDEKQRDRVSAKNSLESYVYTMKQQVEGE-LKEKIPESDRQVIISKCEDTISWLDVHQSAEKHEYESKREELEKVCAPIITKVY 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 59/118 (50.00%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG KNKITITND+ RL+ +EIE+MV +AEK+  ED+  K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  518 TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.586e-29
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLS++EIE+MV EAEKYK EDE+  K++ AKN LE+YAY+++ T  +++   K++ + ++    A D  I WLD NQ A A+E++DK KELE   N ++  +Y
Sbjct:  493 TGKSEKITITNDKGRLSQEEIERMVSEAEKYKEEDEKEAKRIAAKNGLESYAYSLKQTTSEKQFEEKVEASKREAFTKACDDTIAWLDENQTATAEEYDDKRKELEQAGNEVLKDLY 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.533e-29
Identity = 56/117 (47.86%), Postives = 85/117 (72.65%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITI NDKGRLS ++IE+M+++AE++  ED++  ++ +AKN LE+Y YN+RNT  + ++  KL+ ADK+ +E  + + I+WLDSN  A  DE +DK KE+E   NPI+ K+Y
Sbjct:  493 TGKSEKITIRNDKGRLSSEQIEEMLKQAEQFAEEDKQALERTQAKNGLESYIYNVRNTTNEPQLKDKLEAADKEALEKIVKEGIEWLDSNTTASTDELKDKQKEIEEQVNPIMTKIY 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.614e-29
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP74_DROME (Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.614e-29
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMH 608          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
GRP78_MOUSE5.450e-3050.0078 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU5.450e-3050.0078 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN5.450e-3050.0078 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN5.450e-3050.0078 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP70_SCHMA7.118e-3052.99Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
GRP78_SPETR7.118e-3050.0078 kDa glucose-regulated protein OS=Spermophilus t... [more]
HSP72_PICAN1.586e-2949.57Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HSP72_USTMA3.533e-2947.86Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP75_DROME4.614e-2950.00Major heat shock 70 kDa protein Bc OS=Drosophila m... [more]
HSP74_DROME4.614e-2950.00Major heat shock 70 kDa protein Bbb OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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