FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP73_DROME (Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.614e-29
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_DROME (Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.614e-29
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP73_PLAFA (Heat shock 70 kDa protein PPF203 (Fragment) OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.026e-29
Identity = 54/106 (50.94%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELE 322
            TG++N+ITITNDKGRLSKD+I++MV +AEKYK EDE++K ++EA+N LENY YN++NT++DE + +K+   D +K    +   + WL+ NQ AE +E+ +K K+ E
Sbjct:   95 TGKQNQITITNDKGRLSKDDIDRMVNDAEKYKEEDEQNKNRIEARNNLENYCYNVKNTLQDENLKTKIPKDDSEKCMKTVKSVLDWLEKNQTAETEEYNEKEKDTE 200          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: MAG29_DERFA (Allergen MAG29 (Fragment) OS=Dermatophagoides farinae GN=MAG29 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.753e-28
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:   56 KDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            KD+IE+MV+EAE YK ED++ + ++ AKN+LE YA+ M+ T+ +E I SK+   D+KKI D +D+ ++WLD+N LAE DEFE + KELES+CNPII K+Y
Sbjct:    1 KDDIERMVKEAESYKEEDDKQRDRIAAKNSLEGYAFQMKATLDEEAIKSKVSEEDRKKILDKVDEVLKWLDANALAEKDEFEHQRKELESVCNPIITKLY 100          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_DROME (Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 2.290e-28
Identity = 58/118 (49.15%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++  V+    G KLD ADK  + D  +  I+WLDSN  AE +EF+ K++EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQAVEQAPAG-KLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_DROME (Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.290e-28
Identity = 58/118 (49.15%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++  V+    G KLD ADK  + D  +  I+WLDSN  AE +EF+ K++EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQAVEQAPAG-KLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.991e-28
Identity = 54/118 (45.76%), Postives = 93/118 (78.81%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG K KI ITND+ RL+ ++I++M+++AEK+  ED++ K++VE++N LE+YAY+++N + D +K+G+KL   +K K+E AID++I+WL+ N  A+ +E++ + K+LE+I  P+IAK+Y
Sbjct:  518 TGNKEKIVITNDQNRLTPEDIDRMIRDAEKFADEDKKLKERVESRNELESYAYSLKNQIGDKDKLGAKLSDDEKNKLESAIDESIKWLEQNPDADPEEYKKQKKDLEAIVQPVIAKLY 635          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_DROSI (Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.662e-28
Identity = 58/118 (49.15%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+ ++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  +  I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKQRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.662e-28
Identity = 57/118 (48.31%), Postives = 86/118 (72.88%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLSK++IEKM+ +AEK+  ED+  ++KVEAKN L+NY  +M+ TV+D +K+  K++  DK  I  A+  A  WL++N  A+++  + K+K+LE++C PII K+Y
Sbjct:  517 TGKSRGITITNDKGRLSKEQIEKMINDAEKFADEDKNLREKVEAKNKLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLY 634          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.701e-28
Identity = 57/118 (48.31%), Postives = 86/118 (72.88%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLSK++IEKM+ +AEK+  ED+  ++KVEAKN L+NY  +M+ TV+D +K+  K++  DK  I  A+  A  WL++N  A+++  + K+K+LE++C PII K+Y
Sbjct:  141 TGKSRGITITNDKGRLSKEQIEKMINDAEKFADEDKNLREKVEAKNNLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLY 258          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
HSP73_DROME4.614e-2950.00Major heat shock 70 kDa protein Bb OS=Drosophila m... [more]
HSP72_DROME4.614e-2950.00Major heat shock 70 kDa protein Ba OS=Drosophila m... [more]
HSP73_PLAFA6.026e-2950.94Heat shock 70 kDa protein PPF203 (Fragment) OS=Pla... [more]
MAG29_DERFA1.753e-2855.00Allergen MAG29 (Fragment) OS=Dermatophagoides fari... [more]
HSP71_DROME2.290e-2849.15Major heat shock 70 kDa protein Ab OS=Drosophila m... [more]
HSP70_DROME2.290e-2849.15Major heat shock 70 kDa protein Aa OS=Drosophila m... [more]
HSP7C_DROME2.991e-2845.76Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
HSP72_DROSI6.662e-2849.15Major heat shock 70 kDa protein Ba OS=Drosophila s... [more]
GRP78_PLAFO6.662e-2848.3178 kDa glucose-regulated protein homolog OS=Plasmo... [more]
GRP78_PLAFA8.701e-2848.3178 kDa glucose-regulated protein homolog (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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