FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.701e-28
Identity = 58/119 (48.74%), Postives = 91/119 (76.47%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ N ITITNDKGRLSK+EIEK ++EAEK+  +D+E ++KVE++NALENYA++++N   DE   G+KL+  DK+ + DAI++A+++L+ N   A  DEF+++ ++L  +  PI +K+Y
Sbjct:  528 TGKSNSITITNDKGRLSKEEIEKKIEEAEKFAQQDKELREKVESRNALENYAHSLKNQANDENGFGAKLEEDDKETLLDAINEALEFLEDNFDTATKDEFDEQKEKLSKVAYPITSKLY 646          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.938e-27
Identity = 57/118 (48.31%), Postives = 84/118 (71.19%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+   ITI NDKGRLS+ EI++MV EAEKY  EDE+ ++++ ++NALE+Y +N++  V D+    KLD ADK  + D  +  I+WLDSN  AE +EF+ K++EL   C+PI+ KM+
Sbjct:  492 STGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKQRQRITSRNALESYVFNVKQAV-DQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMH 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.532e-27
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +G K  ITITNDK RLS+ +I++MV+EA     ED+  K++VEAKN LENY Y ++NT+ D +KIG K++  DK+ IE AI  A+ WLD N  AE +EF+++ K LE I  PI +K+Y
Sbjct:  521 SGSKESITITNDKERLSQADIDRMVKEAADAADEDKAAKERVEAKNTLENYIYQIKNTIGDKDKIGGKIESDDKETIETAISDALSWLDVNSSAEKEEFDEQYKILEKIVQPIFSKLY 638          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.318e-27
Identity = 57/119 (47.90%), Postives = 88/119 (73.95%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSNQL-AEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLSKDEIE+MV+EAE++  ED   ++ +EAKN+LENYA+++RN V D+  +G K+   DK+ + DA+ + ++WL++N + A  ++FE+K + L +I  PI +K+Y
Sbjct:  525 TGKSETITITNDKGRLSKDEIERMVEEAERFAEEDALIRETIEAKNSLENYAHSLRNQVADKSGLGGKISADDKEALNDAVTETLEWLEANSVSATKEDFEEKKEALSAIAYPITSKIY 643          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP74_ANOAL (Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.640e-27
Identity = 51/118 (43.22%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG++  ITI NDKGRLS+ +I++MV EAEK++ EDE+ ++++ A+N LE Y +N++ ++ D +  SKL  AD+K ++D  ++ ++W+D N +A+ +EFE KM+EL   C+PI+ K++
Sbjct:  493 STGKEKNITIKNDKGRLSQADIDRMVSEAEKFREEDEKQRERISARNQLEAYCFNLKQSL-DGEGASKLSDADRKTVQDRCEETLRWIDGNTMADKEEFEHKMQELTKACSPIMTKLH 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.620e-27
Identity = 56/121 (46.28%), Postives = 91/121 (75.21%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK---IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLSK++I++MV+EAEKY  +D E K K+E++N+LENYA+ ++  VKDE    +GSKL+  DK+ ++DAI + +++++ N   A ++EFE++ ++L  + +PI +K+Y
Sbjct:  537 TGKSESITITNDKGRLSKEDIDRMVEEAEKYAEQDSELKAKIESRNSLENYAHMLKGQVKDESENGLGSKLNDDDKETLDDAIKETLEFIEDNYDSATSEEFEEQKQKLIDVASPITSKLY 657          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.256e-26
Identity = 50/118 (42.37%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            ++G++  ITI NDKGRLS+ +I++MV EAEKY+ EDE+ ++ + A+N LE Y +N++ ++ D +  SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++
Sbjct:  493 SSGKEKNITIKNDKGRLSQADIDRMVSEAEKYREEDEKQREAIAARNQLEAYCFNLKQSL-DGEGSSKLSDADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLH 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.256e-26
Identity = 50/118 (42.37%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            ++G++  ITI NDKGRLS+ +I++MV EAEKY+ EDE+ ++ + A+N LE Y +N++ ++ D +  SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++
Sbjct:  493 SSGKEKNITIKNDKGRLSQADIDRMVSEAEKYREEDEKQREAIAARNQLEAYCFNLKQSL-DGEGSSKLSEADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLH 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.256e-26
Identity = 55/119 (46.22%), Postives = 88/119 (73.95%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRL+++EI++MV EAEKY  ED+  ++++EA+N LENYA++++N V DE  +G K+D  DK+ I DA+ +A  WL+ N   A A++F+++ ++L ++  PI +K+Y
Sbjct:  527 TGKAESITITNDKGRLTQEEIDRMVAEAEKYAEEDKATRERIEARNGLENYAFSLKNQVNDEDGLGGKIDEEDKETILDAVKEAQDWLEENAATASAEDFDEQKEKLSNVAYPITSKLY 645          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+  KITI+NDKGRLSK EI++M+ EAEKYK ED+  +++V++KN LE Y Y  R  V D   G  L   ++ K+ D       WLD N LAE +EFE  +KE + IC PI++K++
Sbjct:  495 STGKSEKITISNDKGRLSKAEIDRMLSEAEKYKVEDDRQRERVQSKNNLEAYIYACRQAVDDAPSG-VLSETERSKVRDKCSSEASWLDKNSLAEKEEFESHLKECQRICTPIMSKIH 611          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
GRP78_PICAN8.701e-2848.7478 kDa glucose-regulated protein homolog OS=Pichia... [more]
HSP71_DROSI1.938e-2748.31Major heat shock 70 kDa protein Ab OS=Drosophila s... [more]
BIP2_DICDI2.532e-2750.85Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
GRP78_YARLI4.318e-2747.9078 kDa glucose-regulated protein homolog OS=Yarrow... [more]
HSP74_ANOAL5.640e-2743.22Heat shock protein 70 B2 OS=Anopheles albimanus GN... [more]
GRP78_DEBHA9.620e-2746.2878 kDa glucose-regulated protein homolog OS=Debary... [more]
HSP72_ANOAL1.256e-2642.37Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL1.256e-2642.37Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]
GRP78_NEUCR1.256e-2646.2278 kDa glucose-regulated protein homolog OS=Neuros... [more]
HSP7B_DROME2.143e-2647.46Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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