FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.656e-26
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG    ITI NDKGRLS+ +I++M+ EAEKY  EDE H++++ A+N LE Y + ++     E  G ++  ADK  I +   +A++WLDSN  AE +E+E K+KELE  C+PI+ KM+
Sbjct:  493 TGNAKNITIKNDKGRLSQADIDRMLSEAEKYAEEDERHRQRIAARNQLETYLFGVKEAA--ENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCSPIMTKMH 607          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.144e-26
Identity = 54/118 (45.76%), Postives = 86/118 (72.88%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRL+++EI++MV+EAEK+ +ED   K KVE++N LENYA++++N V  + +G KL+  DK+ + DA +  ++WLD N + A A++F++K + L  +  PI +K+Y
Sbjct:  538 TGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLENYAHSLKNQVNGD-LGEKLEEEDKETLLDAANDVLEWLDDNFETAIAEDFDEKFESLSKVAYPITSKLY 654          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.144e-26
Identity = 54/119 (45.38%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLS++EI++MV EAE++  ED+  K K+EA+N LENYA++++N V DE  +G ++D  DK+ I DA+ +  +WL+ N   A  ++FE++ ++L ++  PI +K+Y
Sbjct:  537 TGKAESITITNDKGRLSQEEIDRMVAEAEEFAEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY 655          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.144e-26
Identity = 54/119 (45.38%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLS++EI++MV EAE++  ED+  K K+EA+N LENYA++++N V DE  +G ++D  DK+ I DA+ +  +WL+ N   A  ++FE++ ++L ++  PI +K+Y
Sbjct:  537 TGKAESITITNDKGRLSQEEIDRMVAEAEEFAEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY 655          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.144e-26
Identity = 54/119 (45.38%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRLS++EI++MV EAE++  ED+  K K+EA+N LENYA++++N V DE  +G ++D  DK+ I DA+ +  +WL+ N   A  ++FE++ ++L ++  PI +K+Y
Sbjct:  537 TGKAESITITNDKGRLSQEEIDRMVAEAEEFAEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY 655          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.370e-25
Identity = 52/118 (44.07%), Postives = 86/118 (72.88%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+K+ I I  +  RL+ +EIE+M+Q+AEK+  +D++ K++VE +N LE+ AY+++N VKD EK+G KL   + K IEDA D+AI+W+++N  AE  +++ +   LES+  PI++K+Y
Sbjct:  517 TGKKSNIVINKETNRLTPEEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLY 634          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.042e-25
Identity = 51/118 (43.22%), Postives = 86/118 (72.88%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+K+ I I  +  R++ +EIE+M+Q+AEK+  +D++ K++VE +N LE+ AY+++N VKD EK+G KL   + K IEDA D+AI+W+++N  AE  +++ +   LES+  PI++K+Y
Sbjct:  517 TGKKSNIVINKETNRITPEEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLY 634          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.894e-25
Identity = 51/118 (43.22%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    8 GQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTV-KDEKIGSKLDPADKKKIEDAIDQAIQWLD-SNQLAEADEFEDKMKELESICNPIIAKMY 355
            G+  K+ I NDKGRLS+++IE+MV+EAE++  ED+  K+++EA+N LENYAY+++     DE++G K+DP DK+ + DA++   +WL+   + A  +EFED+ ++L+++ +PI  K+Y
Sbjct:  524 GKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.176e-24
Identity = 54/118 (45.76%), Postives = 83/118 (70.34%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWL-DSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   +TITN+KGRLSKD+IE+MV EAE Y+ EDEE + KVEA++ LENYA++++N V  + +G KL+  DK+ + +A +  ++WL D++  A  +EF +K + L     PI +K+Y
Sbjct:  534 TGKSESVTITNEKGRLSKDDIERMVAEAENYQKEDEEIRAKVEARHKLENYAHSLKNQVNGD-LGDKLEEDDKETLLEAANDVLEWLEDNSDSATKEEFNEKFESLSQTAYPITSKLY 650          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.620e-24
Identity = 53/118 (44.92%), Postives = 83/118 (70.34%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 355
            TG+   ITITNDKGRL++DEI++MV+EAEK+ +ED   + K+EA+N LENYA++++N V+ + +  KL+  DK+ + DA +  ++WL+ N   A  +EFE+K + L     PI +K+Y
Sbjct:  524 TGKSESITITNDKGRLTQDEIDRMVEEAEKFASEDAVLRTKIEARNKLENYAHSIKNQVEGD-LAEKLEEEDKETLLDAANDTLEWLEDNFDSATTEEFEEKFEALSKTAYPITSKLY 640          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
HSP68_DROME3.656e-2646.15Heat shock protein 68 OS=Drosophila melanogaster G... [more]
GRP78_YEAST8.144e-2645.7678 kDa glucose-regulated protein homolog OS=Saccha... [more]
GRP78_ASPNG8.144e-2645.3878 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPKA8.144e-2645.3878 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW8.144e-2645.3878 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ECHMU2.370e-2544.0778 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_ECHGR4.042e-2543.2278 kDa glucose-regulated protein OS=Echinococcus g... [more]
GRP78_SCHPO6.894e-2543.2278 kDa glucose-regulated protein homolog OS=Schizo... [more]
GRP78_ASHGO1.176e-2445.7678 kDa glucose-regulated protein homolog OS=Ashbya... [more]
GRP78_CANGA2.620e-2444.9278 kDa glucose-regulated protein homolog OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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