FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_BACSK (Chaperone protein dnaK OS=Bacillus clausii (strain KSM-K16) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.322e-11
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            T ++  ITIT+  G LS++EI+KMVQEAE     D++ +++VE +N  +   ++   T+KD  +G  +D A+K K E A D+  + L+++     D+ +    EL+ I   +  K+Y
Sbjct:  462 TNKEQSITITSSSG-LSEEEIDKMVQEAEANAEADKKRREQVELRNEADQLVFSTEKTLKD--LGDNVDQAEKDKAEAAKDKLKKALEAD---NTDDIKAAKDELQEIVTALTTKLY 572          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_THEYD (Chaperone protein dnaK OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dnaK PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.338e-11
Identity = 36/117 (30.77%), Postives = 71/117 (60.68%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++  I IT   G LS++EI+KM++EAE +  ED   K+  EA+N  +N  Y +  T++D  +G ++   ++K+IE+AI++  +  D++   + +E +  ++EL    + +  ++Y
Sbjct:  488 TGKEQSIRITASSG-LSEEEIKKMIREAEAHAEEDRRKKQIAEARNEADNMIYTVEKTLRD--MGDRISEDERKRIEEAIEKCRRIKDTSN--DVNEIKAAVEELAKASHRVAEELY 599          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_BACLD (Chaperone protein dnaK OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dnaK PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.338e-11
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++  ITI +  G LS DEIE+MV+EAE+    D + K+++E +N  +   +    T+KD  +  K D A  KK  +A D     ++ N L   DE + K  EL++I   +  K+Y
Sbjct:  463 TGKEQNITIKSSSG-LSDDEIERMVKEAEENAEADAKKKEEIELRNEADQLVFTTEKTLKD--LEGKADEAQVKKANEAKDALKAAIEKNDL---DEIKAKKDELQAIVQELSMKLY 573          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_HALHL (Chaperone protein dnaK OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++  I I    G L++DEIE+MV+EAE+   ED   ++ VEA+N  EN  ++ R ++ D  +G ++  A+K++IE AI +  Q  D     + D  E K +EL +    +  K Y
Sbjct:  493 TGKETGIEIKASSG-LTEDEIERMVKEAEENAEEDRRQRELVEARNQAENMIHSTRKSLSD--LGEQVGDAEKQEIESAISELEQVKDGE---DKDAIEQKTQELATKAGELAQKAY 603          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_CAMFF (Chaperone protein dnaK OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dnaK PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 37/117 (31.62%), Postives = 70/117 (59.83%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +G+   ITI+   G LS++EI KMV +AE +K +D++ K+ VEA+NA ++ A+    ++ +  +G K+   D+ KIE A++   + L  ++ A  ++ + K+K L  + + +   MY
Sbjct:  487 SGKAQNITISGSSG-LSEEEINKMVNDAEAHKEDDKKRKEAVEARNAADSLAHQTEKSLSE--MGEKIPAEDRAKIEAALNDLKEVL-KDESASKEQIDVKVKALSEVSHKLAEAMY 599          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_GEOLS (Chaperone protein dnaK OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dnaK PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.400e-11
Identity = 38/117 (32.48%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++  I IT   G LSK+EI+KMV++AE + AED++ ++ +EA+N  ++  Y+   ++K+  +G K+D  +K  IE+ I    + +DS+   +A+  +    EL    + +   MY
Sbjct:  488 TGKEQSIRITASSG-LSKEEIDKMVKDAESHAAEDKKKREAIEARNQADSMIYSTEKSLKE--VGDKVDAVEKGTIENKIADLKKVMDSD---DAEVIKKATDELAQAAHKLAEAMY 598          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_CENSY (Chaperone protein dnaK OS=Cenarchaeum symbiosum GN=dnaK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.400e-11
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            T ++ KITI +   +LSKDEIEK+ ++AEK+  EDE+ K KVE KN  E++ Y     +  + +  K+      KI D I +  + LD     + D    K+  L+++ N I  +MY
Sbjct:  470 TQKEAKITIESSS-KLSKDEIEKLREDAEKFSDEDEKKKGKVELKNEAESFVYTAEKLINHD-LKDKITQEQGIKISDGIREVKEALDQ----DPDILRPKLDSLKAMVNEITTEMY 580          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: DNAK_BACP2 (Chaperone protein dnaK OS=Bacillus pumilus (strain SAFR-032) GN=dnaK PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++  ITI +  G LS DEIEKMV+EAE+    D + K+++E +N  +   +    T+KD  +  K+D    KK  DA D     ++  +L   ++ + K  EL++I   +  K+Y
Sbjct:  463 TGKEQNITIKSSSG-LSDDEIEKMVKEAEENAEADAKKKEEIEVRNEADQLVFTTEKTLKD--LEGKIDEEQVKKANDAKDALKAAIEKGEL---EDIKAKKDELQTIVQELTTKLY 573          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
DNAK_BACSK3.322e-1133.33Chaperone protein dnaK OS=Bacillus clausii (strain... [more]
DNAK_THEYD4.338e-1130.77Chaperone protein dnaK OS=Thermodesulfovibrio yell... [more]
DNAK_BACLD4.338e-1135.04Chaperone protein dnaK OS=Bacillus licheniformis (... [more]
DNAK_HALHL5.666e-1135.04Chaperone protein dnaK OS=Halorhodospira halophila... [more]
DNAK_CAMFF5.666e-1131.62Chaperone protein dnaK OS=Campylobacter fetus subs... [more]
DNAK_GEOLS7.400e-1132.48Chaperone protein dnaK OS=Geobacter lovleyi (strai... [more]
DNAK_CENSY7.400e-1135.04Chaperone protein dnaK OS=Cenarchaeum symbiosum GN... [more]
DNAK_BACP29.665e-1133.33Chaperone protein dnaK OS=Bacillus pumilus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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