FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_AERHH (Adenine phosphoribosyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=apt PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            G +ARGFIFG P+A+A+G  FVP+RKP KLP  +I E Y+LEYG   +++H  A+  G++ L+VDDL+A GGT+ A ++L+
Sbjct:   60 GTEARGFIFGAPVAYAMGLGFVPVRKPGKLPRAVIEESYALEYGTDTLQLHTDAIVPGDKVLVVDDLLATGGTVDATVKLI 140          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_NITEC (Adenine phosphoribosyltransferase OS=Nitrosomonas eutropha (strain C91) GN=apt PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            GI++RGFIF  P+A+A+GA FVP+RK  KLP E IS +Y LEYG   +E+H  A+   +R L++DDL+A GGT+ AAI+L+  M   I    ++
Sbjct:   54 GIESRGFIFAAPVAYALGAGFVPIRKQGKLPAETISCDYQLEYGYDKIEIHADAIDKDDRVLMIDDLIATGGTMEAAIKLVQEMGGKIIECCFV 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ERWT9 (Adenine phosphoribosyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=apt PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP +  +E+Y+LEYG   +E+H  A+Q G+  L+VDDL+A GGT+ A + L+    GS+++  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRKTFAEDYALEYGTDTLELHCDAIQPGDVVLVVDDLLATGGTIEATVNLIRRAGGSVKDAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_CLOBA (Adenine phosphoribosyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=apt PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  176 VRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            +  + G +ARGFIFG P+A+A+GA FVP+RKP KLPGE IS  Y LEYG   +++H  +++ G+R  IVDDL+A GGT+    +L+      +  L ++
Sbjct:   49 IDLIVGPEARGFIFGVPVAYALGAGFVPVRKPGKLPGETISVNYDLEYGSDSLQIHKDSIKKGQRVAIVDDLLATGGTVEGVAKLVEEAGGEVVSLAFL 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SERP5 (Adenine phosphoribosyltransferase OS=Serratia proteamaculans (strain 568) GN=apt PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A A+G  FVP+RKP KLP   +SE Y LEYG   +E+H  A+ AG++ L+VDDL+A GGT+ A  +L+    G + +  FI+
Sbjct:   77 GTEARGFLFGAPVALALGVGFVPVRKPGKLPRATLSESYELEYGTDKLEIHTDAISAGDKVLVVDDLLATGGTIEATAKLIRRLGGEVTDAAFII 171          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SALG2 (Adenine phosphoribosyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=apt PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y LEY    +E+HV A++ G+  L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYSTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_STAS1 (Adenine phosphoribosyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=apt PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  176 VRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILIYIQMLN 484
            V  + G +ARGFI G P+A+++G  F P+RK  KLP E+I  EY LEYG  V+ MH  A++ G+R LI DDL+A GGT+ AAI+L   LG +   I  +I ++ LN
Sbjct:   49 VDIIVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLN 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_STAES (Adenine phosphoribosyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=apt PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  173 SVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILIYIQMLN 484
            ++  + G +ARGFI G P+A+++G  F P+RK  KLP E+I  EY+LEYG  V+ MH  A++ G+R LI DDL+A GGT+ AAI+L   LG +   I  +I ++ LN
Sbjct:   48 NIDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYNLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEQLGGIVVGIAFIIELKYLN 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_STAEQ (Adenine phosphoribosyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=apt PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  173 SVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILIYIQMLN 484
            ++  + G +ARGFI G P+A+++G  F P+RK  KLP E+I  EY+LEYG  V+ MH  A++ G+R LI DDL+A GGT+ AAI+L   LG +   I  +I ++ LN
Sbjct:   48 NIDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYNLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEQLGGIVVGIAFIIELKYLN 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PELPB (Adenine phosphoribosyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=apt PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  107 PISHRFSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            P+  R  +    +H L  +       + GI+ARGFI G  +++A+G  F+P+RKP KLP +++S+EY LEYG   +E+HV A+ AG++ L+VDDL+A GGT  AA  L+
Sbjct:   30 PVGFRLVIDSLTQHYL--QEGMDFDVIVGIEARGFIIGGALSYALGKGFIPVRKPGKLPADVVSQEYQLEYGSDTIEIHVDALVAGQKVLLVDDLLATGGTALAAAALV 136          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_AERHH2.429e-1951.85Adenine phosphoribosyltransferase OS=Aeromonas hyd... [more]
APT_NITEC3.173e-1948.94Adenine phosphoribosyltransferase OS=Nitrosomonas ... [more]
APT_ERWT93.173e-1947.37Adenine phosphoribosyltransferase OS=Erwinia tasma... [more]
APT_CLOBA3.173e-1945.45Adenine phosphoribosyltransferase OS=Clostridium b... [more]
APT_SERP54.143e-1948.42Adenine phosphoribosyltransferase OS=Serratia prot... [more]
APT_SALG24.143e-1947.37Adenine phosphoribosyltransferase OS=Salmonella ga... [more]
APT_STAS15.412e-1948.11Adenine phosphoribosyltransferase OS=Staphylococcu... [more]
APT_STAES5.412e-1946.73Adenine phosphoribosyltransferase OS=Staphylococcu... [more]
APT_STAEQ5.412e-1946.73Adenine phosphoribosyltransferase OS=Staphylococcu... [more]
APT_PELPB5.412e-1943.12Adenine phosphoribosyltransferase OS=Pelodictyon p... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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