FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ACTP2 (Adenine phosphoribosyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=apt PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAA---IRLLGSMQNHIFILIYI 472
            G ++RGFIFG P+A A+G  FV +RKPKKLP  +IS+ Y+LEYG+  +E+H+ +V+  +  L+VDDL+A GGT+ A    IR LG    H   +I++
Sbjct:   58 GTESRGFIFGAPVALALGVPFVLVRKPKKLPRAVISQSYALEYGEDTLEIHLDSVKENDNVLMVDDLLATGGTIDATAKLIRRLGGKVEHAAFVIWL 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHESR (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain MR-7) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP   IS+ Y LEYG   +E+H  A+ A ++ L+VDDL+A GGT+ A ++L+    G +Q+  F++
Sbjct:   62 GTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVI 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHESM (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain MR-4) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP   IS+ Y LEYG   +E+H  A+ A ++ L+VDDL+A GGT+ A ++L+    G +Q+  F++
Sbjct:   62 GTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVI 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHESA (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain ANA-3) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP   IS+ Y LEYG   +E+H  A+ A ++ L+VDDL+A GGT+ A ++L+    G +Q+  F++
Sbjct:   62 GTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVI 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ROSDO (Adenine phosphoribosyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            G++ARGFI G  IA  +   FVP+RK  KLPG+ ISE Y+LEYG+ ++E+H  A+Q GE+ L+VDDL+A GGT  A I+L+  +   I    +I
Sbjct:   55 GLEARGFILGGAIAHQLSKGFVPIRKKGKLPGKTISEAYTLEYGEAIVEIHDDAIQPGEKVLVVDDLLATGGTAEAGIKLIERLGGEIISTSFI 148          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PELLD (Adenine phosphoribosyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            GI+ARGFI G  +A+A+G  FVP+RKP KLP + +S+EY+LEYG   +E+H+ A++ G R L+VDDL+A GGT  AA  L+
Sbjct:   56 GIEARGFIIGSALAYALGKGFVPVRKPGKLPADTVSQEYALEYGTDKIEIHIDALEKGARVLLVDDLLATGGTALAAAPLI 136          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_MESSB (Adenine phosphoribosyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  185 LQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            + GI+ARGFI G  IA  + + F+P+RK  KLP E +   YSLEYG   MEMH+ AV  GE+ ++VDDL+A GGT  AA+RLL  M   I    ++
Sbjct:   58 IAGIEARGFILGGAIAHQLSSGFIPIRKKGKLPHETVRVAYSLEYGLDEMEMHIDAVSPGEKVILVDDLIATGGTAEAAVRLLRQMGAEIVAACFV 153          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_GEOSW (Adenine phosphoribosyltransferase OS=Geobacillus sp. (strain WCH70) GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILIYIQML 481
            G +ARGFI G P+A+A+G  F P+RK  KLP E++  EY LEYGK V+ MH  A++ G+R LI DDL+A GGT+ A I+L   LG +   I  LI +  L
Sbjct:   54 GPEARGFIIGCPVAYALGVGFAPVRKEGKLPREVVRVEYGLEYGKDVLTMHKDAIKPGQRVLITDDLLATGGTIRATIQLVEQLGGVVAGIAFLIELTEL 153          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_CLOTE (Adenine phosphoribosyltransferase OS=Clostridium tetani GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  173 SVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            +V  + G +ARGF+FG P+A+A+GA FVP+RK  KLP   IS +Y LEYG   +EMH  +++ G+R +I DDL+A GGT+ + I ++ S+   I  + ++
Sbjct:   48 NVDVVVGPEARGFLFGAPLAYALGAGFVPVRKKGKLPSTTISSKYELEYGSDELEMHKDSIKPGQRVVIADDLLATGGTICSVIEMIESLGGEIVSINFL 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_BACSU (Adenine phosphoribosyltransferase OS=Bacillus subtilis GN=apt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILIYIQMLN 484
            G +ARGFI G P+A+A+G  F P+RK  KLP E+I  +Y LEYGK V+ +H  A++ G+R LI DDL+A GGT+ A I+L   LG +   I  LI +  L+
Sbjct:   54 GPEARGFIIGCPVAYALGVGFAPVRKEGKLPREVIKVDYGLEYGKDVLTIHKDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGVVAGIAFLIELSYLD 154          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_ACTP21.575e-1847.42Adenine phosphoribosyltransferase OS=Actinobacillu... [more]
APT_SHESR2.056e-1846.32Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_SHESM2.056e-1846.32Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_SHESA2.056e-1846.32Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_ROSDO2.056e-1848.94Adenine phosphoribosyltransferase OS=Roseobacter d... [more]
APT_PELLD2.056e-1854.32Adenine phosphoribosyltransferase OS=Pelodictyon l... [more]
APT_MESSB2.056e-1848.96Adenine phosphoribosyltransferase OS=Mesorhizobium... [more]
APT_GEOSW2.056e-1850.00Adenine phosphoribosyltransferase OS=Geobacillus s... [more]
APT_CLOTE2.056e-1844.00Adenine phosphoribosyltransferase OS=Clostridium t... [more]
APT_BACSU2.056e-1848.51Adenine phosphoribosyltransferase OS=Bacillus subt... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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