FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_LEPIC (Adenine phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=apt PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIF 457
            GI+ARGF+ G P+A+ +G  F+P+RK  KLP E +SEEY LEYGK V+E+H  ++Q G++ L++DDL+A GGT+ AA++LL  +   I+
Sbjct:   55 GIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVSEEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIY 143          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHEPA (Adenine phosphoribosyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=apt PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG  V+E+HV A+ A ++ L++DDL+A GGT+ A ++L+    GS+ +  F++
Sbjct:   62 GTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAINADDKVLVIDDLLATGGTIEATVKLIRKLGGSVNDAAFVI 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_MANSM (Adenine phosphoribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=apt PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 48/95 (50.53%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G ++RGFIFG P+A A+G  FV +RKP+KLP E IS+ Y LEYG+  +EMHV +V+AG+  LI+DDL+A GGT+ A I+L+    G +++  F++
Sbjct:   59 GTESRGFIFGAPVALALGLPFVLVRKPRKLPRETISQSYQLEYGEDTLEMHVDSVKAGDNVLIIDDLLATGGTVDATIKLIKRLGGDVKHAAFVI 153          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_HALOH (Adenine phosphoribosyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=apt PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  176 VRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            + ++ GI+ARGFI G P+A A+   F+P+RKP KLP E IS  Y LEYG   +E+H  A+Q G++ L+VDDL+A GGT+ AAI L+  +Q  I  L ++
Sbjct:   49 IDYIVGIEARGFIIGTPLALALNKGFIPIRKPGKLPAERISTSYELEYGTNEIEIHRDAIQPGDKILLVDDLLATGGTVKAAIELINKLQGEIVSLGFL 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHEHH (Adenine phosphoribosyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=apt PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG  V+E+HV A+ A ++ L++DDL+A GGT+ A ++L+    GS+ +  F++
Sbjct:   62 GTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAINAEDKVLVIDDLLATGGTIEATVKLIRQLGGSVNDAAFVI 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ERWCT (Adenine phosphoribosyltransferase OS=Erwinia carotovora subsp. atroseptica GN=apt PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A A+G  FVP+RKP KLP   ISE Y LEYG   +E+H  A+ AG+  L++DDL+A GGTL A ++L+    G++ +  FI+
Sbjct:   64 GTEARGFLFGAPVALALGVGFVPVRKPGKLPRPTISESYELEYGSDTLEIHADAISAGDNVLVIDDLLATGGTLEATVKLIRRLGGTVNDAAFII 158          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHESH (Adenine phosphoribosyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=apt PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILI 466
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG  V+E+HV A+   ++ L++DDL+A GGT+ A ++L   LG   NH   +I
Sbjct:   63 GTEARGFLFGAPLALELGLGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAINENDKVLVIDDLLATGGTIEATVKLIRNLGGKVNHAAFVI 157          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_DESHY (Adenine phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=apt PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            G +ARGF+ G P+A+A+G  FVP+RKP KLPG+ +SE Y LEYG   +E+H  A+Q G+R  IVDDL+A GGT SA  RL+
Sbjct:   57 GPEARGFLLGAPVAYALGIGFVPVRKPGKLPGKTVSETYELEYGSDTLEVHADAIQPGQRIAIVDDLLATGGTTSATARLI 137          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_DESHD (Adenine phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=apt PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            G +ARGF+ G P+A+A+G  FVP+RKP KLPG+ +SE Y LEYG   +E+H  A+Q G+R  IVDDL+A GGT SA  RL+
Sbjct:   54 GPEARGFLLGAPVAYALGIGFVPVRKPGKLPGKTVSETYELEYGSDTLEVHADAIQPGQRIAIVDDLLATGGTTSATARLI 134          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_CITK8 (Adenine phosphoribosyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=apt PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFII 156          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_LEPIC1.682e-2050.56Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_SHEPA2.197e-2049.47Adenine phosphoribosyltransferase OS=Shewanella pe... [more]
APT_MANSM2.197e-2050.53Adenine phosphoribosyltransferase OS=Mannheimia su... [more]
APT_HALOH2.197e-2048.48Adenine phosphoribosyltransferase OS=Halothermothr... [more]
APT_SHEHH2.869e-2049.47Adenine phosphoribosyltransferase OS=Shewanella ha... [more]
APT_ERWCT2.869e-2049.47Adenine phosphoribosyltransferase OS=Erwinia carot... [more]
APT_SHESH3.748e-2050.53Adenine phosphoribosyltransferase OS=Shewanella se... [more]
APT_DESHY3.748e-2056.79Adenine phosphoribosyltransferase OS=Desulfitobact... [more]
APT_DESHD3.748e-2056.79Adenine phosphoribosyltransferase OS=Desulfitobact... [more]
APT_CITK83.748e-2048.42Adenine phosphoribosyltransferase OS=Citrobacter k... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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