FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_FRATN (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=apt PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYIQMLN 484
            G ++RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG   +E+H  A +  +  L+VDDL+A GGT  A + L+   Q  +  LI++  L+
Sbjct:   59 GTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELD 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_FRATM (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=apt PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYIQMLN 484
            G ++RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG   +E+H  A +  +  L+VDDL+A GGT  A + L+   Q  +  LI++  L+
Sbjct:   59 GTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELD 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_FRAT1 (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=apt PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYIQMLN 484
            G ++RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG   +E+H  A +  +  L+VDDL+A GGT  A + L+   Q  +  LI++  L+
Sbjct:   59 GTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELD 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_FRASC (Adenine phosphoribosyltransferase OS=Frankia sp. (strain CcI3) GN=apt PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  185 LQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGS 439
            + GI+ARGF+   P+A  +G   VP+RK  KLPG   S  Y LEYG   +E+H  AV  G+R L+VDD++A GGT +AA  LL +
Sbjct:   70 IAGIEARGFLLAAPVADRLGTGLVPIRKQGKLPGPTRSASYDLEYGAATIEIHADAVHDGDRVLLVDDVLATGGTAAAAHSLLAA 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_DROPS (Adenine phosphoribosyltransferase OS=Drosophila pseudoobscura pseudoobscura GN=Aprt PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  161 EPSPSVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            +  P V  + G+ +RGF+F   +A  +G  + P+RK  KL GE++S EY LEYG    E+   A+Q G++ +IVDDL+A GG+L AA  L+
Sbjct:   56 QSQPEVEVIVGLDSRGFLFNLLLATELGVGYTPIRKKGKLAGEVVSVEYQLEYGSDTFELQRTAIQPGQKVVIVDDLLATGGSLLAASELV 146          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SORC5 (Adenine phosphoribosyltransferase OS=Sorangium cellulosum (strain So ce56) GN=apt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL 430
            G+++RGFIFG  ++  + A FVP+RKP KLP       Y+LEYG   +EMH  +++ G R LIVDDL+A GGT SAA  L
Sbjct:   75 GVESRGFIFGGALSARLNASFVPVRKPGKLPAATDRVAYALEYGTAELEMHKGSIRPGARVLIVDDLLATGGTASAAAEL 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_RHOCS (Adenine phosphoribosyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=apt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  185 LQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYIQML 481
            L GI++RGF+   P++ A+G  F  +RK  KLPG+ I   Y LEYG   +E+   A+  G+R +++DDL+A GGT++AAI LL S+   +    +I  L
Sbjct:   52 LVGIESRGFLVAAPLSLALGCGFAMVRKKGKLPGQTIRYTYDLEYGTDTVEIQADAIAPGQRVVVLDDLLATGGTMAAAIHLLRSVGADVTAAAFIMEL 150          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PROMM (Adenine phosphoribosyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=apt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            GI++RGFI G  +A      FVP+RKP KLPG+++  +YSLEYG   +E+H  A+Q   R L+VDDL+A GGT  A + L+
Sbjct:   54 GIESRGFIVGTALATNRKIGFVPVRKPGKLPGDVLGIDYSLEYGSDRLEIHADALQGHPRVLLVDDLLATGGTARATVELI 134          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PROM3 (Adenine phosphoribosyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=apt PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            GI++RGFI G  +A      FVP+RKP KLPG+++  +YSLEYG   +E+H  A+Q   R L+VDDL+A GGT  A + L+
Sbjct:   54 GIESRGFIVGTALATNRKIGFVPVRKPGKLPGDVLGIDYSLEYGSDRLEIHADALQGHPRVLMVDDLLATGGTAKATVELI 134          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_LACH4 (Adenine phosphoribosyltransferase OS=Lactobacillus helveticus (strain DPC 4571) GN=apt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSM 442
            G +ARGFI G P+A  +G  FVP RKP KLP E+    Y LEYG   +EMH  A++ G+R ++ DDL+A  GTL A+  L+ ++
Sbjct:   56 GPEARGFIVGCPVATELGLGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQRVVLCDDLMATAGTLRASKELIENL 139          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_FRATN4.741e-1542.86Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_FRATM4.741e-1542.86Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_FRAT14.741e-1542.86Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_FRASC4.741e-1548.24Adenine phosphoribosyltransferase OS=Frankia sp. (... [more]
APT_DROPS4.741e-1542.86Adenine phosphoribosyltransferase OS=Drosophila ps... [more]
APT_SORC56.192e-1551.25Adenine phosphoribosyltransferase OS=Sorangium cel... [more]
APT_RHOCS6.192e-1541.41Adenine phosphoribosyltransferase OS=Rhodospirillu... [more]
APT_PROMM6.192e-1549.38Adenine phosphoribosyltransferase OS=Prochlorococc... [more]
APT_PROM36.192e-1549.38Adenine phosphoribosyltransferase OS=Prochlorococc... [more]
APT_LACH46.192e-1547.62Adenine phosphoribosyltransferase OS=Lactobacillus... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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