FC930894 | Citrus Genome Database

Overview


Name	FC930894
Unique Name	FC930894
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	649

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10305	contig	Ccv1_Contig10305:54..702.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.674e-45
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.493e-45
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.493e-45
Identity = 97/174 (55.75%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.958e-45
Identity = 97/174 (55.75%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.958e-45
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M+L++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 7.781e-45
Identity = 96/174 (55.17%), Postives = 116/174 (66.67%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG ++F  FDLGGHQ ARR+W                   ERF E+K              VPF+VLGNKID P A SE+ELR+ LG+   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.327e-44
Identity = 95/174 (54.60%), Postives = 116/174 (66.67%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   +RF E+K              VPF++LGNKID P A SEEELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.264e-44
Identity = 93/174 (53.45%), Postives = 116/174 (66.67%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERF E+K              VPF++LGNKID P A SE+ELR+ LGL   TTGKG+V L    +RP+E+FMCS
Sbjct:    1 MWIVNWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGRVQL--EGIRPIELFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.862e-44
Identity = 97/174 (55.75%), Postives = 113/174 (64.94%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEEL IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFLVLGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.587e-44
Identity = 98/174 (56.32%), Postives = 111/174 (63.79%), Query Frame = 1

Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++L+WF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEELSIG ++F  FDLGGH+ ARRVW                   ERF ES+              VP LVLGNKID   A SE ELR+ LGL   TTGK KV L +   RPLEVF CS
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVFTCS 172

The following BLAST results are available for this feature:

BLAST of FC930894 vs. ExPASy Swiss-Prot

BLAST of FC930894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49


Match Name	E-value	Identity	Description
SAR1_ASPCL	2.674e-45	56.32	Small COPII coat GTPase sar1 OS=Aspergillus clavat...	[more]
SAR1_ASPOR	3.493e-45	56.32	Small COPII coat GTPase sar1 OS=Aspergillus oryzae...	[more]
SAR1_ASPFU	3.493e-45	55.75	Small COPII coat GTPase sar1 OS=Aspergillus fumiga...	[more]
SAR1_ASPTN	5.958e-45	55.75	Small COPII coat GTPase sar1 OS=Aspergillus terreu...	[more]
SAR1_ASPNC	5.958e-45	56.32	Small COPII coat GTPase SAR1 OS=Aspergillus niger ...	[more]
SAR1_CHAGB	7.781e-45	55.17	Small COPII coat GTPase SAR1 OS=Chaetomium globosu...	[more]
SAR1_MAGGR	1.327e-44	54.60	Small COPII coat GTPase SAR1 OS=Magnaporthe grisea...	[more]
SAR1_TRIRE	2.264e-44	53.45	Small COPII coat GTPase sar1 OS=Trichoderma reesei...	[more]
SAR1_EMENI	3.862e-44	55.75	Small COPII coat GTPase sar1 OS=Emericella nidulan...	[more]
SAR1_PICPG	6.587e-44	56.32	Small COPII coat GTPase SAR1 OS=Pichia pastoris (s...	[more]

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Properties


Property Name	Value
Genbank description	C34110B10EF PostHarvP1 Citrus clementina cDNA clone C34110B10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC930894 ID=FC930894; Name=FC930894; organism=Citrus clementina; type=EST; length=649bp
TCTTAGGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTG
ATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCG
TTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTAC
GGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTT
TTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAG
ATGAGAGATTGGTCCAACATCAGCCAACACAGTATCCCACATCGGAAGAG
CTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCA
GATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGG
TATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAA
GAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCT
CGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGGAAGAGT
TGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTT
AATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTGTAGCA