FC930896

Overview
NameFC930896
Unique NameFC930896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930896 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.521e-26
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 2 
Query:  332 DSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDP 670
            ++W+   A Q PEYP+ E L +V+  L+ +PP+VFAG              G+AFLLQGGDCAE+F   +A++IR+  + LLQMG VL +   +PVVKVGR+AGQ++KPRS P
Sbjct:   13 NTWRDLPAAQQPEYPDTEALRAVIADLESYPPLVFAGECDQLRARMAAVAKGEAFLLQGGDCAEAFDAVSADHIRNKLKTLLQMGAVLTYAASVPVVKVGRIAGQYSKPRSKP 125
[Close]
BLAST of FC930896 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 56/116 (48.28%), Postives = 67/116 (57.76%), Query Frame = 2 
Query:  323 WTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDP 670
            W  DSW+SK   Q PEYP+K  LE     L   PPIV                 GKAFLLQGGDCAE F     + I    ++LLQM +VL++G   PVV++GRMAGQ+AKPRS P
Sbjct:   12 WAPDSWRSKPIKQCPEYPDKAALEKATNELKTLPPIVLPNEIIRLREHLRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSP 127
The following BLAST results are available for this feature:
BLAST of FC930896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AROF_STRCO8.521e-2648.67Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR9.421e-2548.28Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

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Properties
Property NameValue
Genbank descriptionC34110B12EF PostHarvP1 Citrus clementina cDNA clone C34110B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930896 ID=FC930896; Name=FC930896; organism=Citrus clementina; type=EST; length=671bp
GAGGTTCCTCTTTCACGATAAAGAGTTAAAGAGCCTCCGTTTATTTGAAA
AAAAAAAGGGAAAAAAAGAAATTCGTTTCATTTACATTTCAACAAAAATA
AATTAGAACATTATGGCTCTCGTTGGCAGTACTTCAATTACTCCCACAAA
ATCATCCTTCGTTCAGCCACAATCTCAGCCGTTCATCACCAAACCCAGAT
CAAATATCCATCCCATCTCCGCCGTCCATGCTGCTGACTCTGCCAAGCCA
CCGTCTGCCGTAAAAACCACAACAAAGGCACCCGAGCCAGTCCTCAAGAC
CAGCAATGTGGGTCCCCAAAAATGGACGGTTGACAGCTGGAAATCCAAGA
AGGCTTTGCAGCTGCCGGAGTATCCAAACAAAGAGGAGCTCGAGTCCGTG
CTGAAAACGCTCGACGATTTCCCGCCGATTGTGTTCGCCGGTGAAGCCAG
GAGCTTGGAGGAGCGGCTAGCTGAAGCCGCCATGGGCAAAGCTTTCTTGC
TTCAAGGCGGTGATTGCGCTGAGAGTTTCAAAGAGTTTAATGCTAATAAC
ATTCGTGACACTTTCAGAATCCTTCTCCAGATGGGTGTTGTGCTAATGTT
CGGCGGTCAAATGCCCGTTGTTAAGGTGGGAAGAATGGCAGGGCAGTTTG
CGAAGCCGAGATCAGATCCGT
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