FC930898

Overview
NameFC930898
Unique NameFC930898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:24..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 83/180 (46.11%), Postives = 118/180 (65.56%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTII + +NGG VLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H++++ +   V+ AA LV+ +SY  K  L   +IV GWD+ +GG+++   LGG +  QPFAI      Y+YGF D  ++ GMTKEE +  VV  ++LA+ RDG+SGGV   VT+
Sbjct:   18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT-LGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGGVAYIVTI 196
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.497e-41
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L + +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   ++V GWD+ EGG++YG  LGG +  QPFAI      ++YG+ D A+K GM+ EE       A++LA++RDG+SGGV+  VT+
Sbjct:   20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTI 198
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.225e-40
Identity = 83/180 (46.11%), Postives = 119/180 (66.11%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTII + ++GG VLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +  VV  +SLA++RDG+SGGV   VT+
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTI 196
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.225e-40
Identity = 83/180 (46.11%), Postives = 119/180 (66.11%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTII + ++GG VLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +  VV  +SLA++RDG+SGGV   VT+
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTI 196
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 81/180 (45.00%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE       A++LA+ RDG+SGGV+  VT+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 81/180 (45.00%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE       A++LA+ RDG+SGGV+  VT+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 81/180 (45.00%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE       A++LA+ RDG+SGGV+  VT+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 81/180 (45.00%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE       A++LA+ RDG+SGGV+  VT+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.728e-40
Identity = 81/180 (45.00%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE       A++LA+ RDG+SGGV+  VT+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVIYLVTI 198
[Close]
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.768e-39
Identity = 79/180 (43.89%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTTI+ V ++GG V+G+DSR S G  V NR  DK++ L  ++Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+VR ++Y  +  L   ++V GWD+ EGG++YG  + G +I QPFAI      Y+YG+ D A+K GM+ EE       A++LA+ RDG+SGGV+   T+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGGVIYLATI 198
The following BLAST results are available for this feature:
BLAST of FC930898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PSB9_ORYLA3.223e-4146.11Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB9_HUMAN5.497e-4146.11Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]
PSB9_SALSA1.225e-4046.11Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY1.225e-4046.11Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB9_MUSSI2.089e-4045.00Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB2.089e-4045.00Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSDU2.089e-4045.00Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE2.089e-4045.00Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSB9_MUSPL2.728e-4045.00Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_BOVIN1.768e-3943.89Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC34110C02EF PostHarvP1 Citrus clementina cDNA clone C34110C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930898 ID=FC930898; Name=FC930898; organism=Citrus clementina; type=EST; length=670bp
AAAGAAGCAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAGGGCATT
TAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATG
GAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGGCGTCAC
TTACAACGGCGGCTTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGG
TGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAAT
GTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGA
CTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTG
CAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAAC
AAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGA
AGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGC
CTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGAT
CAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAAGCATTAGTGGT
TAAAGCAGTTTCTCTTGCCATTGCGCGTGATGGTGCTAGTGGAGGTGTTG
TTCGAACCGTCACATTAATT
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