FC930898

Overview
NameFC930898
Unique NameFC930898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:24..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 47/176 (26.70%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  E+A  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 41/176 (23.30%), Postives = 83/176 (47.16%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +G+T     ++  + R +   ++ ++   K+ Q+     +  +G   D+Q +  Y++  L  + +Q      ++  A L+  +L+          ++VGG D      ++ +   G  +E  +A       ++YG  +  + E MT +E   LV++A+S A  RD ASGG++
Sbjct:    8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMI 181          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 47/176 (26.70%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y +G  D+ +   +  EEA  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAV 233          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 48/176 (27.27%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++  DSR S G Y+A    +K+ ++   +    SG AAD       +      + ++ G+  +V  A+ L+  +    +   L  G ++ GWDK +G  +Y V   GT +            + YG  D  ++  ++ EEA  L  +A+  A  RD  SGGVV
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK-KGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVV 246          
The following BLAST results are available for this feature:
BLAST of FC930898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PSB5_HUMAN2.038e-1126.70Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSMB_THEAC4.539e-1123.30Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSB5_RAT4.539e-1126.70Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB8_BOVIN7.743e-1127.27Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC34110C02EF PostHarvP1 Citrus clementina cDNA clone C34110C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930898 ID=FC930898; Name=FC930898; organism=Citrus clementina; type=EST; length=670bp
AAAGAAGCAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAGGGCATT
TAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATG
GAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGGCGTCAC
TTACAACGGCGGCTTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGG
TGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAAT
GTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGA
CTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTG
CAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAAC
AAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGA
AGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGC
CTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGAT
CAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAAGCATTAGTGGT
TAAAGCAGTTTCTCTTGCCATTGCGCGTGATGGTGCTAGTGGAGGTGTTG
TTCGAACCGTCACATTAATT
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