FC930900

Overview
NameFC930900
Unique NameFC930900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT2_MOUSE (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Mus musculus GN=Bcat2 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  248 ASKLTITKTTTP-KEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIG 673
            A+ L I  T  P K+P  S+ L+FGK FTDHML VEW    GW  PRI P+QNL L PA    HY+ + FEG+KAYK     +RLFRP  NM+R+ +S+ R+ LP  D   L + I +L+++D  ++PD  G SLY+RP +IG
Sbjct:   34 AADLQIQMTKEPQKKPAPSQALLFGKTFTDHMLMVEWNNKAGWGPPRIQPFQNLTLHPACSGLHYSLQLFEGLKAYKGGDQQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIRQLIEVDKDWVPDGNGTSLYVRPVLIG 176          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT1_RAT (Branched-chain-amino-acid aminotransferase, cytosolic OS=Rattus norvegicus GN=Bcat1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 67/142 (47.18%), Postives = 90/142 (63.38%), Query Frame = 2
Query:  248 ASKLTITKTTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIG 673
            A  L ITK    K+  D   LVFG  FTDHML VEWT+  GW  P I P++NL + PA  V HYA E FEG+KA++     IRLFRP+ NM+R+ +S+ R  LP  D + L + + +L++LD  ++P +   SLY+RPT IG
Sbjct:   52 AKDLIITKADVLKKKPDPSSLVFGASFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYSTSASLYIRPTFIG 193          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT2_BOVIN (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Bos taurus GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  248 ASKLTITKTTTP-KEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIG 673
            A+ L +  T  P K+P  S+ L+FGK FTDHML VEW    GW  PRI P+QNL L PA    HY+ + FEGMKA+K     +RLFRP  NMER+ +S+ R+ LP+ D   L + I  LV++D  ++P + G SLY+RP +IG
Sbjct:   34 AADLQLEMTQEPHKKPDPSQPLLFGKTFTDHMLMVEWNQEKGWGQPRIQPFQNLTLHPACSALHYSLQLFEGMKAFKGGDQRVRLFRPWLNMERMLRSALRLCLPSFDKIELLECIRRLVEVDQDWVPGSMGTSLYVRPVLIG 176          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: ILVE2_BACSU (Branched-chain-amino-acid aminotransferase 2 OS=Bacillus subtilis GN=ilvK PE=1 SV=5)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  257 LTITKTTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            + +  T+T K   D   L FG+ FTDHM  +++ A  GW+ PRI+PYQ L +DPA  V+HY    FEG+KAY      + LFRP KNMERLN+S+ R+ +P +D + + + + +LV +D  +IP+A G SLY+RP +I T
Sbjct:    6 IRVELTSTKKPKPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSLYIRPFIIAT 145          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT2_PONAB (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Pongo abelii GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 69/143 (48.25%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  248 ASKLTITKTTTP-KEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIG 673
            A+ L +  T  P K+P   + LVFGK FTDHML VEW+   GW  PRI P+QNL L PA+   HY+ + FEGMKA+K     +RLFRP  NM+R+ +S+ R+ LP+ D   L + I  L+++D  ++PDA G SLY+RP +IG
Sbjct:   34 AADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWSDK-GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIG 175          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT2_HUMAN (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens GN=BCAT2 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 69/143 (48.25%), Postives = 93/143 (65.03%), Query Frame = 2
Query:  248 ASKLTITKTTTP-KEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIG 673
            A+ L +  T  P K+P   + LVFGK FTDHML VEW    GW  PRI P+QNL L PA+   HY+ + FEGMKA+K     +RLFRP  NM+R+ +S+ R+ LP+ D   L + I  L+++D  ++PDA G SLY+RP +IG
Sbjct:   34 AADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK-GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIG 175          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: ILVE1_BACSU (Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis GN=ilvE PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 60/136 (44.12%), Postives = 91/136 (66.91%), Query Frame = 2
Query:  269 KTTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            KT   KE  D   L FG+YFTD+M  +++    GWH PRI PY  L LDP++ VFHY    FEG+KAY+   G + LFRP++N++RLN+S  R+++P +D + + + + +LV+L+  ++P  +G SLY+RP +I T
Sbjct:    9 KTVYYKEKPDPSSLGFGQYFTDYMFVMDYEEGIGWHHPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERMSMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIAT 144          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT_CAEEL (Branched-chain-amino-acid aminotransferase, cytosolic OS=Caenorhabditis elegans GN=bcat-1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 58/135 (42.96%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  272 TTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            T    +P+D   L FG  + D+M++ +W A  GWH P+I P   L + P   V HYA E FEGMKAY+     IR+FRP  NM R+ +++ R ALP  D + +  ++ EL++LD  ++P++   SLYLRPT+IGT
Sbjct:   58 TQLKTKPLDPTKLKFGHTYADYMMTCDWDAERGWHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTELLRLDQEWVPNSDVCSLYLRPTLIGT 192          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: ILVE_STAEQ (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ilvE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 61/143 (42.66%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  248 ASKLTITKTTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            + K+   K  + KE  D+ +L FG+YFTD+MLSV++ A  GWH  +IVPY    + PA    HY    FEG+KAYK + G + LFRP++N +R+N S AR+ +P VD +AL + + +LV ++  ++P+  G SLY+RP +  T
Sbjct:    2 SEKVKFEKRESLKEKPDTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAYKHN-GEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLVDVERDWVPEGEGQSLYIRPFVFAT 143          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: ILVE_STAES (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ilvE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 60/143 (41.96%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  248 ASKLTITKTTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            + K+   K  + KE  D+ +L FG+YFTD+MLSV++ A  GWH  +IVPY    + PA    HY    FEG+KAYK + G + LFRP++N +R+N S AR+ +P VD +AL + + +L+ ++  ++P+  G SLY+RP +  T
Sbjct:    2 SEKVKFEKRESLKEKPDTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAYKHN-GEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLIDVERDWVPEGEGQSLYIRPFVFAT 143          
The following BLAST results are available for this feature:
BLAST of FC930900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
BCAT2_MOUSE2.784e-3248.25Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT1_RAT4.749e-3247.18Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT2_BOVIN1.058e-3148.25Branched-chain-amino-acid aminotransferase, mitoch... [more]
ILVE2_BACSU1.805e-3145.00Branched-chain-amino-acid aminotransferase 2 OS=Ba... [more]
BCAT2_PONAB6.858e-3148.25Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_HUMAN8.957e-3148.25Branched-chain-amino-acid aminotransferase, mitoch... [more]
ILVE1_BACSU3.404e-3044.12Branched-chain-amino-acid transaminase 1 OS=Bacill... [more]
BCAT_CAEEL1.430e-2842.96Branched-chain-amino-acid aminotransferase, cytoso... [more]
ILVE_STAEQ1.211e-2742.66Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAES1.581e-2741.96Probable branched-chain-amino-acid aminotransferas... [more]

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Properties
Property NameValue
Genbank descriptionC34110C04EF PostHarvP1 Citrus clementina cDNA clone C34110C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930900 ID=FC930900; Name=FC930900; organism=Citrus clementina; type=EST; length=676bp
GGAGCTTCGCAGGGATACTGCACTGTAGTTCTGGTGTCGAGTCATCTTTC
TAGTTGTTATTTTTTAAATCCCCATTGACTTCCTTGATATCATCATGAAG
TCGCTTCACCAATTTGCTCGCCGACAGGCATTGACCGGGCTCGCAATGCC
CCGCGTCCTCTCATCCCAGAAAATTGCCGCCAGCCAAACATGGCTGAGAG
CTTTCAGTGCCTCCAGAGCAGCCGCCTCCCAGCTCCCGGGTCTTGACGCT
TCGAAATTGACGATCACCAAGACCACCACCCCGAAGGAGCCAATGGACTC
TAAGGATCTTGTCTTTGGTAAATACTTCACAGATCATATGCTCTCTGTGG
AGTGGACGGCTGCCGATGGATGGCACGCACCTCGCATTGTTCCCTACCAG
AACCTCATCTTAGATCCTGCAACCTGTGTGTTCCACTATGCATTTGAATG
TTTCGAGGGCATGAAGGCATACAAGGACAGCACCGGCGGCATCCGTTTGT
TTCGCCCCAACAAGAACATGGAACGCCTAAACAAGTCGTCTGCGCGCATT
GCTCTTCCTACCGTGGACGGTGATGCACTAACAAAAATAATTGGAGAGCT
TGTGAAGCTCGACAGTCGGTTCATCCCGGATGCTCGCGGCTACTCCTTGT
ACCTGCGCCCTACCATGATTGGTACC
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