FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:621..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.644e-61
Identity = 107/219 (48.86%), Postives = 153/219 (69.86%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            NP+ + FVP++   GDN+ ++S    WY GPTL + +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG+++PG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++P +P+V+E+
Sbjct:  179 NPDNITFVPVASLHGDNVFKKSDKTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIES 396          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.804e-61
Identity = 103/216 (47.69%), Postives = 153/216 (70.83%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            ++VPF+P+S + GDN+++ S    WY GPT+LDAL+ + EP++P + PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P+ ++ EVKS+E+HH+ + EA PGDN+G+NV+ +   D++RG V  +  D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A   +E+  K+D R+G   E+ P F+K GDA ++ + P +PMV+E
Sbjct:  179 DEVPFIPVSAYNGDNVVKHSDRTKWYTGPTVLDALNALKEPQKPVNLPLRIPVQDVYSISGVGTVPVGRVETGVLKKGDKVIFEPAHVSGEVKSIEIHHQEIPEAYPGDNIGWNVRGIGKNDIRRGDVCGH-VDNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIE 393          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.804e-61
Identity = 108/219 (49.32%), Postives = 152/219 (69.41%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            NP  + FVP++   GDN+ ++S    WY GPTL + +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++P +P+V+E+
Sbjct:  179 NPANITFVPVASLHGDNVFKKSDRTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMES 396          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.804e-61
Identity = 127/232 (54.74%), Postives = 161/232 (69.40%), Query Frame = 1
Query:   31 FVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG-LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPHQPMVVE 666
            FVPISG+ GDNM+E+STN+ WY GPTL + LD +  PKRP++ PLRLPLQDVYKIGGIGTVPVGRVETG+LK GM VTF P+G    EVKSVEMHH ++ +A+PGDNVGFNVK + VKD+KRG V  ++K+DP      F + VII +H   I NGY PVLDCHT+HIA KF+ +++K D+R GK+              + EP+        K G++  V + P + MVVE
Sbjct:  218 FVPISGWTGDNMLEKSTNMPWYTGPTLFEVLDAMKPPKRPTEDPLRLPLQDVYKIGGIGTVPVGRVETGILKAGMQVTFEPAGKAAVEVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHK-NIRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVE 446          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.065e-60
Identity = 111/218 (50.92%), Postives = 151/218 (69.27%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            N  KV FVP+    GDN+  RS N+ WY GPTL + LD +  P +P DKPLR+P+QDVY I G+GTVPVGRVE+GVLK G  + F P+G   EV+S+E HH  + +A PGDN+GFNV+ V  KD+KRG V  +  ++P   A  FT+++I++ HP  + NGY PV+  HT+ +A + SELV+K+D R+G+E EK P+FLK GD  +VK  P +P+ VE
Sbjct:  183 NTNKVRFVPVVAPAGDNITHRSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGH-PNNPPTVADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVE 399          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.100e-60
Identity = 104/216 (48.15%), Postives = 155/216 (71.76%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            + VP +P+SG++GDN+++ S NL W+KGPTL++AL+ +  P +P DKPLRLP++DVY I GIGTVPVGR+ETGV+K G  V F P+    +VKS+EMHHE +Q+A PGDN+GFNV+ +A  +LKRG V   + ++P      FT+Q++++NHP  I  GY PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E
Sbjct:  179 KNVPIIPLSGYKGDNIMKPSPNLSWWKGPTLMEALNALQVPAKPVDKPLRLPVEDVYSITGIGTVPVGRIETGVMKVGDKVIFMPANKAGDVKSIEMHHEPMQQAGPGDNIGFNVRGIAKNELKRGDVCGPA-NNPPTVVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIE 393          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.049e-60
Identity = 107/216 (49.54%), Postives = 156/216 (72.22%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            +K+PF+P+S ++GDN+IERS N+ WY GPTL++ALD +  P +P DKPLR+P+Q+VY I G GTVPVGRVETGVL+ G  V F P G+  EV+S+EMH++ LQ+A PGDN+GF V+ V+  D+KRG VA +  D P   A  F +++ ++ HP  I  GY PV+  HT+ ++ +  E+  K+D ++G+ +E+ P+FLK GDA +V+  P +P+VVE
Sbjct:  185 DKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGH-LDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVE 399          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.539e-59
Identity = 111/219 (50.68%), Postives = 149/219 (68.04%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            N E   F+P S FEGDN+ E S N  WY GP+LL+AL+++ EP+ P+D PLRLP+QDVY I GIGTVPVGRVETG+L  G  V+F PS ++ EVK+VEMHHE + +A PGDNVGFNV+ V   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  KID  SG+  E+ P F+++GDA +V + P +P+ +E+
Sbjct:  175 NTEDAKFIPTSAFEGDNVSEASENTSWYDGPSLLEALNDLPEPQPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIES 392          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.009e-59
Identity = 107/217 (49.31%), Postives = 147/217 (67.74%), Query Frame = 1
Query:   16 PEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            P  +PFVP S F GDN++  S    WYKG T+++AL+N+  P++PS  PLR+P++D Y I GIGTVPVGRVETG +K G  V F P G   EVKS+EMHHE + +ALPGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +  EL  K+D +SG+  E+ P FLK GDA +V + P +PMV+E
Sbjct:  176 PGDIPFVPTSAFYGDNVVNHSEKTPWYKGVTMMEALNNLKVPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGTMKKGDKVVFMPGGAAGEVKSIEMHHEEIPQALPGDNIGWNVRGIGKADVRRGDVCGHT-DNPPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIE 391          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.624e-59
Identity = 111/215 (51.63%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   22 KVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            KV FVP+    G+N+ +RS N+ WY GPTL + LD +  P +P DKPLR+P+Q+VY I G+G VPVGRVETGVLK G  V F P G   EV+S+E HH  +++A PGDN+GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P + +VVE
Sbjct:  186 KVKFVPVVAPTGENITQRSENMKWYTGPTLEEYLDQLEIPPKPVDKPLRIPIQEVYSISGVGVVPVGRVETGVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVA-GSLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVE 399          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METM71.644e-6148.86Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METTP2.804e-6147.69Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METM62.804e-6149.32Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1AS_PORPU2.804e-6154.74Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_SULSO1.065e-6050.92Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_PICTO3.100e-6048.15Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_AERPE4.049e-6049.54Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_NATPD1.539e-5950.68Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_METBF2.009e-5949.31Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_SULTO2.624e-5951.63Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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