FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_MACCJ (Elongation factor Tu OS=Macrococcus caseolyticus (strain JCSC5402) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 53/166 (31.93%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT-----TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+DA+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GLT     T V  VEM  + L  A  GDN+G  ++ V+ +D++RG V   +K         F ++V +++   + G  + P    +      + +++   ++   G E+
Sbjct:  192 LMDAVDEYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGEEVEI--IGLTEEPSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREDVQRGQVL--AKPGSITPHTKFKAEVYVLSK--EEGGRHTPFFTNYRPQFYFRTTDVTGVVNLPEGTEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_LACRJ (Elongation factor Tu OS=Lactobacillus reuteri (strain JCM 1112) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 48/164 (29.27%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      L + V  +EM H+ L     GDNVG  ++ ++   ++RG V   ++    +   NF  +V +M    + G  + P    +        +++   I+   G E+
Sbjct:  193 LMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVL--AEPGSIQTHKNFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM 352          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_LACRD (Elongation factor Tu OS=Lactobacillus reuteri (strain DSM 20016) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 48/164 (29.27%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      L + V  +EM H+ L     GDNVG  ++ ++   ++RG V   ++    +   NF  +V +M    + G  + P    +        +++   I+   G E+
Sbjct:  193 LMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVL--AEPGSIQTHKNFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM 352          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_FIBSS (Elongation factor Tu OS=Fibrobacter succinogenes (strain ATCC 19169 / S85) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 58/176 (32.95%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   49 FEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQ---IGNGYAPVLDCHTSHI 531
            F+GDN  I R + L   +G          L++A D  I  P+R +DKP  +P++DV+ I G GTV  GR+E GV++    V     G TTE  +  VEM  + L +A  GDNVG  ++    KD+ RG V +  K             V+  +  G+     NGY P     T+ +
Sbjct:  163 FDGDNTPIIRGSALKALEGDPEYQDKVMELMNACDEYIPLPQRDTDKPFLMPIEDVFTITGRGTVATGRIERGVVRLNDKVERIGLGETTEYVITGVEMFRKLLDDAQAGDNVGLLLRGAEKKDIVRGMVLAAPKSVTPHTEFKAEIYVLTKDEGGRHTPFMNGYRPQFYFRTTDV 338          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  124 DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            DNI EP+R  DKP  + ++DV+ I G GTV  GR+E G +K G  +         +T V  VEM  + L E + GDNVG  ++ +  +D++RG V
Sbjct:  208 DNIPEPEREIDKPFLMAVEDVFSISGRGTVATGRIERGKVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGIKKEDIERGMV 302          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BORBZ (Elongation factor Tu OS=Borrelia burgdorferi (strain ZS7) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  109 LLDALDNINE-PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVAS 408
            LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V       T  T V  VEM  + L++   GDNVG  ++ V  KD++RG V S
Sbjct:  193 LLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEVEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLS 295          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BORBU (Elongation factor Tu OS=Borrelia burgdorferi GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  109 LLDALDNINE-PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVAS 408
            LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V       T  T V  VEM  + L++   GDNVG  ++ V  KD++RG V S
Sbjct:  193 LLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEVEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLS 295          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ACIAD (Elongation factor Tu OS=Acinetobacter sp. (strain ADP1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 50/163 (30.67%), Postives = 83/163 (50.92%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ALD  I EP+R  DK   +P++DV+ I G GTV  GRVE G++K G  V         TT V  VEM  + L E   G+N G  ++    +D++RG V   +K    +    F ++V +++   + G  + P L+ +      + +++   I  + G E+
Sbjct:  194 LVEALDTYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVEAGIVKVGESVEIVGIRDTQTTTVTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVL--AKPGTIKPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEM 352          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   19 EKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +S     EGD         +W  G ++LD +    +NI +P+R  DKP  +P++DV+ I G GTV  GR+E GVLK      +V       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V
Sbjct:  168 DDLPVVKVSALKALEGDK--------EW--GQSVLDLMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIVGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQV 295          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: CYSN_CHRSD (Sulfate adenylyltransferase subunit 1 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=cysN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 55/187 (29.41%), Postives = 90/187 (48.13%), Query Frame = 1
Query:   10 INPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG-FVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKID 567
            +N   + FVP+S  EGDN++ +S  + WY+GP LL  L+ +      +   LRLP+Q V +         G +E G+L+PG  V   PSG  + V  +      L+EA PG  +   + +    D+ RG ++ +   + P  +A  F + ++ M H   +  G    L   T  +A K    +T+ID
Sbjct:  191 LNAPDIHFVPLSALEGDNVVNKSEAMSWYEGPALLHLLETVEVTHDKNLTDLRLPVQYVNRPHLDFRGYCGTLEAGILRPGQRVKVLPSGKASTVARIVTFDGDLEEAYPGQAITVTLDDEI--DISRGDWLVAEDAEVPLADA--FEADIVWM-HDTALEPGRLYDLKLATRDLAGK----ITRID 368          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MACCJ1.411e-1231.93Elongation factor Tu OS=Macrococcus caseolyticus (... [more]
EFTU_LACRJ1.411e-1229.27Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_LACRD1.411e-1229.27Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_FIBSS1.411e-1232.95Elongation factor Tu OS=Fibrobacter succinogenes (... [more]
EFTU_CYAA51.411e-1240.00Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_BORBZ1.411e-1241.75Elongation factor Tu OS=Borrelia burgdorferi (stra... [more]
EFTU_BORBU1.411e-1241.75Elongation factor Tu OS=Borrelia burgdorferi GN=tu... [more]
EFTU_ACIAD1.411e-1230.67Elongation factor Tu OS=Acinetobacter sp. (strain ... [more]
EFTU1_STRAW1.411e-1234.78Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
CYSN_CHRSD1.411e-1229.41Sulfate adenylyltransferase subunit 1 OS=Chromohal... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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