FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRSV (Elongation factor Tu OS=Streptococcus sanguinis (strain SK36) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 49/166 (29.52%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K    +     G+  E++      VEM  + L E L GDNVG  ++ +   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEI--VGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STREM (Elongation factor Tu OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 50/166 (30.12%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++    +     G+  E+K      VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEI--VGIRDEIKKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STACT (Elongation factor Tu OS=Staphylococcus carnosus (strain TM300) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            L+ A+D+ I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G    ++      + T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  192 LMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEIIGITEESMKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 293          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SODGM (Elongation factor Tu OS=Sodalis glossinidius (strain morsitans) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V   G    T T    VEM  + L E   G+NVG  ++     D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+
Sbjct:  192 LAEALDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVL--AKPGSIKPHTQFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_PROM3 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9303) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 EKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +SG +  +   E    +D      L+DA+D +I EP+R  +KP  + ++DV+ I G GTV  GR+E G +K G    +V    S  TT V  VEM  + L E L GDN G  ++ +  +D++RG V
Sbjct:  166 DDIPIVQVSGLKAIEGEAEWEAKID-----ELMDAVDTSIPEPEREIEKPFLMAVEDVFSITGRGTVATGRIERGKVKKGEEIEIVGIRDSRKTT-VTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_METI4 (Elongation factor Tu OS=Methylacidiphilum infernorum (isolate V4) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 57/183 (31.15%), Postives = 87/183 (47.54%), Query Frame = 1
Query:   19 EKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHI 531
            +K+P +    +   EGD   E++          L++A+DN I  P+RP D+P  +P++DV+ I G GTV  GRVE G LK      +V   P+   T V  +EM  + L  A  GDNVG  ++ +   D++RG V   +K         F +QV ++            NGY P     T+ +
Sbjct:  166 DKIPIIKGSALKALEGDPEYEKNIL-------ELVEAMDNYIPIPERPKDQPFLMPIEDVFNIEGRGTVVTGRVERGTLKRMEEVEIVGIRPT-TKTVVTDIEMFRKTLDTAEAGDNVGLLLRGIKKDDVERGQVV--AKPGTITPHHKFNAQVYVLKKEEGGRHTAFFNGYRPQFFFRTTDV 338          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_MESVI (Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 56/207 (27.05%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   58 DNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            D+ + R +N    K   L+D +D  I  P+R +DKP  + ++DV+ I G GTV  GRVE G +  G    +V        T V  +EM  + L+E++ GDNVG  ++ +    ++RG V   +K +  +    F S+V ++    + G  + P    +     V+ +++  KID     +   + + +  GD   + +   QP+ +E
Sbjct:  185 DSKLARGSNPWVDKIYALMDQVDKYIPTPQRDTDKPFLMAIEDVFSITGRGTVATGRVERGKVVVGENVDIVGLANIPQNTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKDQVERGMVL--AKPNTIKPHIRFESEVYVL--AKEEGGRHTPFFPGYRPQFYVRTTDVTGKIDSFKADD-GSDTQMVMPGDRVKMVVSLIQPIAIE 386          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  109 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 471
            L+DALD +I EPKR  DKP  +P++DV+ I G GTV  GRVE GV+K G    +V    +  TT    VEM  + L +   GDNVG  ++    ++++RG V   +K         F S+V +++
Sbjct:  194 LVDALDASIPEPKRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVVKVGDELEIVGLRDTAKTT-CTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVL--AKPGTITPHTKFESEVYVLS 315          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DEIGD (Elongation factor Tu OS=Deinococcus geothermalis (strain DSM 11300) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            LLDA+D  I  P+R +DK   +P++DV+ I G GTV  GRVE GV K G  V     GL     T +  VEMH + L + + GDNVG  ++ VA  D++RG V
Sbjct:  203 LLDAIDAYIPTPERATDKTFLMPVEDVFTITGRGTVATGRVERGVCKVGDEVEI--VGLRDTKKTTITGVEMHRKLLDQGMAGDNVGVLLRGVARDDVERGQV 303          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_XANOR (Elongation factor Tu OS=Xanthomonas oryzae pv. oryzae GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+DALD  I EP R  D+P  +P++DV+ I G GTV  GR+E G++K G  +       T  T V  VEM  + L +   GDN G  ++     D++RG V    K    +    F ++V +++     G  + P    +   +  + +++   ID   G E+
Sbjct:  194 LVDALDTFIPEPTRDVDRPFLMPVEDVFSISGRGTVVTGRIERGIIKVGDEIEIVGIRATQKTTVTGVEMFRKLLDQGQAGDNAGLLLRGTKRDDVERGQVL--CKPGSIKPHTEFEAEVYVLSK--DEGGRHTPFFKGYRPQLYFRTTDITGAIDLPEGVEM 352          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRSV1.843e-1229.52Elongation factor Tu OS=Streptococcus sanguinis (s... [more]
EFTU_STREM1.843e-1230.12Elongation factor Tu OS=Streptococcus equi subsp. ... [more]
EFTU_STACT1.843e-1241.18Elongation factor Tu OS=Staphylococcus carnosus (s... [more]
EFTU_SODGM1.843e-1233.13Elongation factor Tu OS=Sodalis glossinidius (stra... [more]
EFTU_PROM31.843e-1236.09Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_METI41.843e-1231.15Elongation factor Tu OS=Methylacidiphilum infernor... [more]
EFTU_MESVI1.843e-1227.05Elongation factor Tu, chloroplastic OS=Mesostigma ... [more]
EFTU_DICNV1.843e-1238.40Elongation factor Tu OS=Dichelobacter nodosus (str... [more]
EFTU_DEIGD1.843e-1244.66Elongation factor Tu OS=Deinococcus geothermalis (... [more]
EFTU_XANOR2.407e-1230.06Elongation factor Tu OS=Xanthomonas oryzae pv. ory... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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