FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  109 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 471
            L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE G++       +V   P+   T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++
Sbjct:  193 LMDAVDESIPDPVRETDRPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVGIRPTSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFEGQVYILS 315          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_HAEDU (Elongation factor Tu OS=Haemophilus ducreyi GN=tufA PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 1
Query:   58 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            + +IE + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+
Sbjct:  187 EKIIELAQHLDSY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_GEOKA (Elongation factor Tu OS=Geobacillus kaustophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK   P  ++       TT V  VEM  + L +A  GDN+G  ++ V+  +++RG V   +K         F +QV ++
Sbjct:  192 LMNAVDEYIPTPQREVDKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDPVEIIGLSDEPKTTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVL--AKPGSITPHTKFKAQVYVL 313          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DEIRA (Elongation factor Tu OS=Deinococcus radiodurans GN=tufA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT----TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN------HPGQIGNGYAPVLDCHTSHI 531
            LLDA+D+ I  P+R +DK   +P++DV+ I G GTV  GRVE G +K    V     GLT    T V  +EMH + L   + GDNVG  ++ VA  D++RG V   +K    +    F + V +++      H    G GY P     T+ +
Sbjct:  203 LLDAVDSYIPTPERDTDKTFLMPVEDVFTITGRGTVATGRVERGTVKVQDEVEI--VGLTDTRKTTVTGIEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVL--AKPGSIKPHTKFEASVYVLSKDEGGRHSAFFG-GYRPQFYFRTTDV 349          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP7 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   88 DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            DW  K   L+D +D  I  P+R  DKP  + ++DV+ I G GTV  GR+E G +K G    +V       +T V  VEM  + L+E L GDNVG  ++ V  ++++RG V   +K    +    F  +V ++
Sbjct:  194 DWVDKILALMDEVDAYIPTPERDIDKPFLMAIEDVFSISGRGTVATGRIERGKIKAGETVEIVGIKEKTKSTTVTGVEMFQKTLEEGLAGDNVGLLLRGVQKEEIERGMVI--AKPGSIKPHTQFEGEVYVL 323          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  130 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            I  P+RP+DK   +P++DV+ I G GTV  GRVETG LK G    +V          V  VEM  + L  AL GDN+G  ++ V  +D++RG V   +K         F  QV ++    + G  + P  + +      + +++   I    G E+
Sbjct:  202 IPTPERPTDKAFLMPIEDVFTITGRGTVATGRVETGTLKVGDEVEIVGMKDEITKVVVTGVEMFRKILDSALAGDNIGALLRGVQREDIERGQVL--AKPGSITPHNKFVGQVYVLKK--EEGGRHTPFFNGYRPQFYFRTTDVTGSIQLPDGVEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPN (Elongation factor Tu OS=Chlamydia pneumoniae GN=tuf PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  124 DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            DNI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K    V     G T E  V  VEM  + L E   G+NVG  ++ +   D++RG V    + +  +    F S V ++
Sbjct:  198 DNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLGETKETIVTGVEMFRKELPEGRAGENVGLLLRGIGKNDVERGMVV--CQPNSVKPHTKFKSAVYVL 312          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CAMLR (Elongation factor Tu OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 54/189 (28.57%), Postives = 86/189 (45.50%), Query Frame = 1
Query:   40 ISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            ISG     + E     D      +LD +    D I  P R +DK   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +D++RG V +  K        +F ++V I+N     G  + P  + +     V+ +++   I    G E+
Sbjct:  171 ISGSALQALEEAKAGQDGEWSKKILDLMAAVDDYIPTPARDTDKDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIRDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEDVERGMVLAKPKS--ITPHTDFEAEVYILNK--DEGGRHTPFFNNYRPQFYVRTTDVTGAIKLAEGVEM 355          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF--GPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRS 576
            L++A+D+ I  P+R ++ P  L ++DV+ I G GTV  GRVE G ++ G  V          T V  VEM  + L EAL GDNVG  ++ +   D++RG V   +K         F++ V ++            +GY P     T+ +  K +E++   D  S
Sbjct:  272 LMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKDTRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVL--AKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEES 433          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU1_ORITB (Elongation factor Tu 1 OS=Orientia tsutsugamushi (strain Boryong) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 51/165 (30.91%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+DA+D+ I +P R  D+P  +P++DV+ I G GTV  GR+E GV+K G  V     GL +  K+    VEM  + L +   GDNVG  ++ +  +D++RG V   +K        +F ++V ++    + G  + P    +      + +++  +I   SGKE+
Sbjct:  192 LMDAIDDYIPQPTRVLDQPFLMPIEDVFSILGRGTVVTGRIERGVIKVGDEVEI--VGLRSTQKTICTGVEMFKKELDQGQAGDNVGILLRGIKREDVERGQVL--AKPGTITPHCSFEAEVYVLTK--EEGGRHTPFFQNYRPQFYCRTTDVTGEIALLSGKEM 350          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCMM2.407e-1235.20Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_HAEDU2.407e-1229.61Elongation factor Tu OS=Haemophilus ducreyi GN=tuf... [more]
EFTU_GEOKA2.407e-1236.29Elongation factor Tu OS=Geobacillus kaustophilus G... [more]
EFTU_DEIRA2.407e-1235.53Elongation factor Tu OS=Deinococcus radiodurans GN... [more]
EFTU_CYAP72.407e-1234.85Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CLOAB2.407e-1231.41Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_CHLPN2.407e-1235.90Elongation factor Tu OS=Chlamydia pneumoniae GN=tu... [more]
EFTU_CAMLR2.407e-1228.57Elongation factor Tu OS=Campylobacter lari (strain... [more]
EFTU2_SOYBN2.407e-1231.10Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTU1_ORITB2.407e-1230.91Elongation factor Tu 1 OS=Orientia tsutsugamushi (... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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