FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:621..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: CYSN_SALPK (Sulfate adenylyltransferase subunit 1 OS=Salmonella paratyphi A (strain AKU_12601) GN=cysN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 58/216 (26.85%), Postives = 102/216 (47.22%), Query Frame = 1
Query:   25 VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG--FVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            + FVP+S  EGDN+  +S N+ WY GPTLL+ L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +       +EA  G+ +   + +    D+ RG   +A+N    PAR AA     V +   P   G  Y   L    +   ++       I+  + +++E  P    NG  G+V+M   +P+ ++
Sbjct:  200 IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKMLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDI--DISRGDLLLAANETLAPARHAA--IDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLP---LNG-IGLVEMTFDEPLALD 407          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: CYSN_SALPA (Sulfate adenylyltransferase subunit 1 OS=Salmonella paratyphi A GN=cysN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 58/216 (26.85%), Postives = 102/216 (47.22%), Query Frame = 1
Query:   25 VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG--FVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            + FVP+S  EGDN+  +S N+ WY GPTLL+ L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +       +EA  G+ +   + +    D+ RG   +A+N    PAR AA     V +   P   G  Y   L    +   ++       I+  + +++E  P    NG  G+V+M   +P+ ++
Sbjct:  200 IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKMLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDI--DISRGDLLLAANETLAPARHAA--IDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLP---LNG-IGLVEMTFDEPLALD 407          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_XYLFA (Elongation factor Tu OS=Xylella fastidiosa GN=tufA PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/164 (29.88%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  109 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L +ALD +I  P+R  D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  T  V  VEM  + L +   GDN G  ++     +++RG V   +K    +    F ++V +++   + G  + P  + +T    ++ +++  K+    G E+
Sbjct:  194 LAEALDTHIPNPERAIDRPFLMPVEDVFSISGRGTVVTGRVECGVIKVGDEVEIVGIRPTSKTI-VTGVEMFRKLLDQGQAGDNAGLLLRGTKRDEVERGQVL--AKPGSIKAHKEFEAEVYVLSK--EEGGRHTPFFNGYTPQFYMRTTDITGKVCLPEGVEM 352          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +SG +    IE     +  K   L+ A+D+ I EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G  +       T  T V  VEM  + L E + GDNVG  ++ +  +D++RG V
Sbjct:  166 DDIPVVQVSGLKA---IEGEAEWE-AKIEELMAAVDSSIPEPEREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS3 (Elongation factor Tu OS=Synechococcus sp. (strain CC9311) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +SG +    IE     +  K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G  + V        T V  VEM  + L E + GDNVG  ++ +  +D++RG V
Sbjct:  166 DDIPVVQVSGLKA---IEGEAEWE-AKIEELMAAVDASIPEPEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVGEEVEVVGIREPRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   19 EKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +SG +  +   E    +D      L+ A+D NI EP R  DKP  + ++DV+ I G GTV  GR+E G++K G  +       T  + V  VEM  + L E + GDNVG  ++ +  +D++RG V
Sbjct:  166 DDIPVVQVSGLKAIEGEAEWEAKID-----ELMAAVDANIPEPVREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKSTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRP1 (Elongation factor Tu OS=Streptococcus pyogenes serotype M1 GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPSSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_RICAH (Elongation factor Tu OS=Rickettsia akari (strain Hartford) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 471
            L+DA+DN I  P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  V       T  T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++
Sbjct:  192 LMDAVDNYIPHPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEVEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDQFEAEVYVLS 313          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_PROM1 (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL1A) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +SG +    IE     DW  K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G +  G    +V    + LTT V  VEM  + L E + GDNVG  ++ +  +D++RG V
Sbjct:  166 DDIPVVQVSGLKA---IEGEA--DWETKIDDLMTAVDASIPEPEREIDKPFLMAVEDVFSITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTT-VTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/164 (29.88%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+DA+D+ I EP R  DKP  +P++DV+ I G GTV  GR+E+GV+K G    +V   P+  +  V  +EM  + L +   GDN G   + V  ++L+RG V   +K         F ++V I+    + G  + P  + +      + +++   +    G E+
Sbjct:  191 LMDAVDSYIPEPVRDVDKPFLMPIEDVFSISGRGTVGTGRIESGVIKIGEEVEIVGIKPTRKSV-VTGIEMFQKTLDQGQAGDNAGILFRGVDKEELERGMVI--AKPGTITPHTKFKAEVYILKK--EEGGRHTPFFNNYRPQFYFRTTDVTGAVTLPEGVEM 349          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_SALPK2.407e-1226.85Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
CYSN_SALPA2.407e-1226.85Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
EFTU_XYLFA3.143e-1229.88Elongation factor Tu OS=Xylella fastidiosa GN=tufA... [more]
EFTU_SYNSC3.143e-1235.88Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNS33.143e-1235.88Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNR33.143e-1234.85Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_STRP13.143e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_RICAH3.143e-1236.29Elongation factor Tu OS=Rickettsia akari (strain H... [more]
EFTU_PROM13.143e-1237.59Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROA23.143e-1229.88Elongation factor Tu OS=Prosthecochloris aestuarii... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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