FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   19 EKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            E+ P V +S     EGD    +S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE G++       +V   P    T V  VEM  + L +   GDNVG  ++ +  +D++RG V
Sbjct:  167 EEAPVVKVSALKALEGDEKWVKSVE-------ELMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVGIRPDTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_MYCHP (Elongation factor Tu OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=tuf PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   46 GFEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            GF+GDN  I   + L   +G          L+DA+D  I EPKR +DKP  + ++DV+ I G GTV  GRVE GVL+      +V   P+  T  V  +EM  + L+EA  GDN G  ++ +   +++RG V +  K         F + V ++    + G  + P    +      + +++   I+ + G+E+
Sbjct:  165 GFDGDNAPIIAGSALKALQGDPEYEKGILELMDAVDTYIEEPKRETDKPFLMAVEDVFTITGRGTVATGRVERGVLQLNEEVEIVGLKPTKKTV-VTGIEMFRKNLKEAQAGDNAGLLLRGIDRSEVERGQVLAKPKTIVPH--TQFEATVYVLKK--EEGGRHTPFFHNYKPQFYFRTTDVTGGIEFKPGREM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   58 DNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            +N I+R  N +W  K  +L+DA+D  I  P R  +K   + ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  + L E + GDN+G  ++ V  KD++RG V
Sbjct:  185 NNSIQRGEN-EWVDKIHSLMDAVDEYIPTPVRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMV 302          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ERWCT (Elongation factor Tu OS=Erwinia carotovora subsp. atroseptica GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 50/157 (31.85%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  130 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGSIKPHTQFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ENTS8 (Elongation factor Tu OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 1
Query:   40 ISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            +   EGD      +IE + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+
Sbjct:  176 LKALEGDAEWEAKIIELAGHLDSY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKDTAKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGSIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTH (Elongation factor Tu OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 47/164 (28.66%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    +V    S   T V  +EM  + L +A+ GDN+G  ++ +   +++RG V   +K    +    F +QV ++    + G  + P  + +      + +++   ++   G E+
Sbjct:  197 LMEEVDKYIPTPQRDIDKPFAMPVEDVFTITGRGTVATGRVERGTLKMGDEVEIVGLSDSPKKTVVTGIEMFRKLLDQAVAGDNIGALLRGIQRNEVERGQVL--AKPGSIKPHTYFEAQVYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGVVELPQGTEM 356          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 47/164 (28.66%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+ A+D  I  P+R +DKP  +P++D++ I G GTV  GRVE G+LK G    +V        + +  +EM  + L EA  GDN+G  ++ V   +++RG V + +     +   +FT QV ++    + G  + P  + +      + +++   I    G E+
Sbjct:  194 LMAAVDEYIPTPERATDKPFLMPVEDIFTITGRGTVATGRVERGILKVGDEIEIVGLSDESKKSVITGIEMFRKLLDEAQAGDNIGALLRGVQRDEIQRGQVLAAT--GSVKPHKSFTGQVYVLKK--EEGGRHTPFFNGYRPQFYFRTTDVTGSIALPEGVEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  109 LLDALDNINE-PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            LL+ +DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V       T  T V  VEM  + L++   GDNVG  ++ V  KD++RG V
Sbjct:  193 LLETMDNYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGVIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGEAGDNVGLLLRGVDKKDIERGQV 293          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  109 LLDALDNINE-PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            LL+ +DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V       T  T V  VEM  + L++   GDNVG  ++ V  KD++RG V
Sbjct:  193 LLETMDNYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGVIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGEAGDNVGLLLRGVDKKDIERGQV 293          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ASTLO (Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV-TFGPSGL-TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKID 567
            L+D +D+ I  P R +DK   L ++DV  I G GTV  GR+E G +K G  V   G   + +T +  +EM  ++L EA+ GDNVG  ++ +   +++RG V   +K    +    F SQV I+    + G  + P  + +     V+ +++  KI+
Sbjct:  202 LMDKIDSYIPTPIRDTDKDFLLAIEDVLSITGRGTVATGRIERGKIKVGETVELIGLKNIKSTTITGLEMFQKSLDEAIAGDNVGVLLRGIQKNEVERGMVI--AKPGTIQPHIKFNSQVYILTK--EEGGRHTPFFEGYKPQFYVRTTDVTGKIE 353          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCVP3.143e-1234.81Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]
EFTU_MYCHP3.143e-1229.90Elongation factor Tu OS=Mycoplasma hominis (strain... [more]
EFTU_GRATL3.143e-1237.19Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_ERWCT3.143e-1231.85Elongation factor Tu OS=Erwinia carotovora subsp. ... [more]
EFTU_ENTS83.143e-1229.69Elongation factor Tu OS=Enterobacter sakazakii (st... [more]
EFTU_CLOTH3.143e-1228.66Elongation factor Tu OS=Clostridium thermocellum (... [more]
EFTU_CLOTE3.143e-1228.66Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU_BORRA3.143e-1242.57Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL3.143e-1242.57Elongation factor Tu OS=Borrelia duttonii (strain ... [more]
EFTU_ASTLO3.143e-1231.41Elongation factor Tu, plastid OS=Astasia longa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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