FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-----GPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            L+DA+D  I +P R  DKP  +P++DV+ I G GTV  GR+E GV+K G  V       G   L + V  VEM  + L     GDNVG  ++ +  +D++RG V   +K    +    F +++ ++
Sbjct:  249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVL 372          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: CYSN_SALHS (Sulfate adenylyltransferase subunit 1 OS=Salmonella heidelberg (strain SL476) GN=cysN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 58/216 (26.85%), Postives = 102/216 (47.22%), Query Frame = 1
Query:   25 VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG--FVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            + FVP+S  EGDN+  +S N+ WY GPTLL+ L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +       +EA  G+ +   + +    D+ RG   +A+N    PAR AA     V +   P   G  Y   L    +   ++       I+  + +++E  P    NG  G+V+M   +P+ ++
Sbjct:  200 IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDI--DISRGDLLLAANETLAPARHAA--IDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLP---LNG-IGLVEMTFDEPLALD 407          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRZT (Elongation factor Tu OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRZP (Elongation factor Tu OS=Streptococcus pneumoniae (strain P1031) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRZJ (Elongation factor Tu OS=Streptococcus pneumoniae (strain JJA) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRR6 (Elongation factor Tu OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPN (Elongation factor Tu OS=Streptococcus pneumoniae GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPM (Elongation factor Tu OS=Streptococcus pyogenes serotype M28 GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPJ (Elongation factor Tu OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPI (Elongation factor Tu OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTM_ARATH3.143e-1234.92Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
CYSN_SALHS3.143e-1226.85Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
EFTU_STRZT4.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRZP4.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRZJ4.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRR64.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRPN4.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae G... [more]
EFTU_STRPM4.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPJ4.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRPI4.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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