FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPG (Elongation factor Tu OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPF (Elongation factor Tu OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPD (Elongation factor Tu OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPC (Elongation factor Tu OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRPB (Elongation factor Tu OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  196 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 355
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRP7 (Elongation factor Tu OS=Streptococcus pneumoniae (strain 70585) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRP6 (Elongation factor Tu OS=Streptococcus pyogenes serotype M6 GN=tuf PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRP4 (Elongation factor Tu OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRP3 (Elongation factor Tu OS=Streptococcus pyogenes serotype M3 GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+D +D+ I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I++     G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
[Close]
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRP2 (Elongation factor Tu OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRPG4.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPF4.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPD4.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPC4.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPB4.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP74.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRP64.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP44.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae s... [more]
EFTU_STRP34.105e-1229.88Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP24.105e-1229.88Elongation factor Tu OS=Streptococcus pneumoniae s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
back to top